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Genetically Appropriate Choices for Plant Materials to Maintain Biological Diversity ,[object Object],[object Object],[object Object],[object Object]
Acknowledgements  Andy Kratz, Norman Ellstrand, Sue Mazer, Mary Mahalovich, Gay Austin, Len Nunney, Nick Waser, Laura Galloway, Ruth Shaw, Vicky Erickson,  Steve Monsen, Randy Johnson, Patrick McGuire, a bunch of reviewers and many others, especially co-author Deborah Rogers.  The USDA Forest Service, Rocky Mountain Region provided funding and logistical support for “the Guide”: ,[object Object],[object Object],[object Object]
For Genetics Part of Ecological Restoration Goal, What Matters? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Species Selection  Source Selection ,[object Object],[object Object],[object Object],[object Object]
Factors to Consider in Selection of Sources ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered?  Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations Address selection of plant introduction stock Address whether or not to introduce plants Slide modified from  Johnson & Roy 2006
Steps for informing choices (Rogers and Montalvo 2004) 1. Identify project objective 2. Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species?  Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],A B D C
Consider Landscape Scale Strategies at all Steps  Prevailing Wind during bloom period Plant propagule source reserves Planting in buffer zones of reserve  (encourage use of reserve propagules) River flow direction Restoration site Restoration site Big hills Slide modified from  Johnson & Roy 2006
Bailey’s System: ww.fs.fed.us/colormap/ecoreg1_provinces 200 Humid Temperate Domain 220 Hot Continental Division 221 Eastern Broadleaf Forest (Oceanic) Province
 
www.epa.gov/wed/pages/ecoregions/level_iii.htm 84: Atlantic Coastal Pine Barrens 50: Northern Lakes and Forests 58: Northeastern Highlands 64: Northern Piedmont
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context 3. Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
After Disturbance, Always Consider Extent of Natural Regeneration ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species?  Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
What is a seed transfer seed zone? ,[object Object],[object Object],[object Object],[object Object]
Late 1930’s – First seed zone maps ,[object Object],[object Object],[object Object],[object Object],[object Object]
www.epa.gov/wed/pages/ecoregions/level_iii.htm Level III units can be further subdivided based on details of soil, elevation, evapotranspiration, and vegetation
 
USDA Hardiness Zones
Foresters began creating a system for species-specific seed transfer long ago ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Nassella pulchra,  purple needlegrass Basic model: V P  = V G  + V E in common garden: V P  ~= V G   Elymus glaucus Traditional Common Garden Studies (Knapp & Rice; Erickson & Sorenson)
Foresters grew seed sources from diverse areas (provenances) in several common environments
Long-term provenance trials provided evidence of the problems that could occur when using the wrong seed source A 1955 cold snap in early November led to the decline of off-site Douglas-fir provenances in a trial established in 1915  It’s the rare climatic events that tend to show maladaptation in long-lived trees
Researchers determine which environmental and climatic variables from the seed source locations correlate with traits measured in the study plots example of stepped cline in  ponderosa pine (Sorensen and others  2001 )   Data provided by G Randy Johnson, USFS Data often show geographic patterns in morphology and fitness-related traits
Seed-collection zones for  Pinus   echinata , shortleaf pine  (Wells 1979) See Guide, pp 120-121 for ponderosa pine
Pinus echinata , shortleaf pine ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Improve Seed Transfer Guidelines with Genetic Data ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Common garden tests showed continuous (clinal) variation with elevation and latitude in  morphology and important ecological variable such as disease resistance, length of growing season, response to day length, and dormancy.
Geographic Patterns in  Liriodendron tulipifera ,[object Object],[object Object],[object Object],[object Object]
Also Consider Performance of Hybrids
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
Life History Traits
 
 
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species?  Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
Choice of Plant Materials and Effects of Mixing Populations ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Likelihood of effects depends on magnitude of genetic differentiation, life histories, particular genetic architectures of source and recipient populations, site conditions
Is There Data on Target Species or on Species with Similar Traits? ,[object Object],[object Object],[object Object]
Low structure correlates with high gene dispersal and consequently high similarity of populations (but with isolation by distance)
Effect of Crossing Distance on F 1  Fitness for 66 Studies Comparing Crosses Within and Among Populations 55% of studies showed lower fitness of hybrids than parents (OBD). 32% showed heterosis.  14% showed no effect of crossing distance.  96% of 49 studies tested for and found inbreeding depression.  table built in 2001-- can add more data now-- including for > 1 generation-- eventually can test for expected patterns with life-history
Other Methods are Being Devised to Assist in Making Choices ,[object Object],[object Object],[object Object],[object Object],[object Object]
Bart Johnson and Bitty Roy (2006 in prep.) Genetic Effects Rapid Assessment Matrix   To identify potential undesirable outcomes from introduction of off-site plant stock ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],* To extent possible distinguish between physical distance, environmental distance    and effective dispersal distance
Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic  DLP = Distance less problematic NP = Distance not problematic -- or ++    lesser or greater likelihood for problems Matrix tracks two issues:  success on site and potential for undesirable genetic effects Slide modified from  Johnson & Roy 2006
Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic  DLP = Distance less problematic NP = Distance not problematic -- or ++    lesser or greater likelihood for problems Elymus glaucus Slide modified from  Johnson & Roy 2006
Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic  DLP = Distance less problematic NP = Distance not problematic -- or ++    lesser or greater likelihood for problems Roemer’s Fescue Slide modified from  Johnson & Roy 2006
Genetically Local? ,[object Object],[object Object],[object Object],[object Object]
Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species?  Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system?  Is there evidence of inbreeding or outbreeding depression? Site considerations
 
Challenges for using evolutionary-based, ecological restoration to maintain biodiversity ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Native Cultivars: Considerations ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Ends Along a Continuum: Source adapted or general purpose? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Modified from Chris Richards
Knowledge of Plant Material Releases ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Knowledge of Plant Material Releases ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Consider Landscape Context of Project  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Nuts & Bolts: Genetically Appropriate Choices for Plant Materials to Maintain Biological Diversity

  • 1.
  • 2.
  • 3.
  • 4.
  • 5.
  • 6. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations Address selection of plant introduction stock Address whether or not to introduce plants Slide modified from Johnson & Roy 2006
  • 7. Steps for informing choices (Rogers and Montalvo 2004) 1. Identify project objective 2. Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 8.
  • 9.
  • 10. Consider Landscape Scale Strategies at all Steps Prevailing Wind during bloom period Plant propagule source reserves Planting in buffer zones of reserve (encourage use of reserve propagules) River flow direction Restoration site Restoration site Big hills Slide modified from Johnson & Roy 2006
  • 11. Bailey’s System: ww.fs.fed.us/colormap/ecoreg1_provinces 200 Humid Temperate Domain 220 Hot Continental Division 221 Eastern Broadleaf Forest (Oceanic) Province
  • 12.  
  • 13. www.epa.gov/wed/pages/ecoregions/level_iii.htm 84: Atlantic Coastal Pine Barrens 50: Northern Lakes and Forests 58: Northeastern Highlands 64: Northern Piedmont
  • 14. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context 3. Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 15.
  • 16. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 17. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 18.
  • 19.
  • 20. www.epa.gov/wed/pages/ecoregions/level_iii.htm Level III units can be further subdivided based on details of soil, elevation, evapotranspiration, and vegetation
  • 21.  
  • 23.
  • 24. Nassella pulchra, purple needlegrass Basic model: V P = V G + V E in common garden: V P ~= V G Elymus glaucus Traditional Common Garden Studies (Knapp & Rice; Erickson & Sorenson)
  • 25. Foresters grew seed sources from diverse areas (provenances) in several common environments
  • 26. Long-term provenance trials provided evidence of the problems that could occur when using the wrong seed source A 1955 cold snap in early November led to the decline of off-site Douglas-fir provenances in a trial established in 1915 It’s the rare climatic events that tend to show maladaptation in long-lived trees
  • 27. Researchers determine which environmental and climatic variables from the seed source locations correlate with traits measured in the study plots example of stepped cline in ponderosa pine (Sorensen and others 2001 ) Data provided by G Randy Johnson, USFS Data often show geographic patterns in morphology and fitness-related traits
  • 28. Seed-collection zones for Pinus echinata , shortleaf pine (Wells 1979) See Guide, pp 120-121 for ponderosa pine
  • 29.
  • 30.
  • 31. Common garden tests showed continuous (clinal) variation with elevation and latitude in morphology and important ecological variable such as disease resistance, length of growing season, response to day length, and dormancy.
  • 32.
  • 34. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species threatened or endangered? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 36.  
  • 37.  
  • 38. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 39.
  • 40.
  • 41. Low structure correlates with high gene dispersal and consequently high similarity of populations (but with isolation by distance)
  • 42. Effect of Crossing Distance on F 1 Fitness for 66 Studies Comparing Crosses Within and Among Populations 55% of studies showed lower fitness of hybrids than parents (OBD). 32% showed heterosis. 14% showed no effect of crossing distance. 96% of 49 studies tested for and found inbreeding depression. table built in 2001-- can add more data now-- including for > 1 generation-- eventually can test for expected patterns with life-history
  • 43.
  • 44.
  • 45. Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic DLP = Distance less problematic NP = Distance not problematic -- or ++  lesser or greater likelihood for problems Matrix tracks two issues: success on site and potential for undesirable genetic effects Slide modified from Johnson & Roy 2006
  • 46. Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic DLP = Distance less problematic NP = Distance not problematic -- or ++  lesser or greater likelihood for problems Elymus glaucus Slide modified from Johnson & Roy 2006
  • 47. Genetic Effects Rapid Assessment Matrix Codes: DP = Distance problematic DLP = Distance less problematic NP = Distance not problematic -- or ++  lesser or greater likelihood for problems Roemer’s Fescue Slide modified from Johnson & Roy 2006
  • 48.
  • 49. Steps for informing choices (Rogers and Montalvo 2004) Identify project objective Determine project context Is natural regeneration sufficient to render introductions unnecessary? Is the species a state or federally listed species? Are there seed transfer rules? Is the species clonal? Is there evidence of genetic differentiation or local adaptation? Is the species polyploid? What is the main breeding system? Mating system? Is there evidence of inbreeding or outbreeding depression? Site considerations
  • 50.  
  • 51.
  • 52.
  • 53.
  • 54.
  • 55.
  • 56.