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          Antibody development
       Antibody characterization
Protein engineering & expression
Interaction	to	be	studied                 Extraction	of	the	target	domain




Epidermal	Growth
	Factor	Receptor


                                                                     The	BHP	solution:
                                                                 insertion	into	the	scaffold




                                               •		 Antigen	production	&	customized	antibodies
    ANTIBODY DEVELOPMENT	                      •		 Antibodies	against	non-immunodominant	regions
                                               •		 Antibodies	against	cryptic	regions	



                                               •	   Epitope	mapping	(linear	and	non-linear)
    ANTIBODY CHARACTERIZATION                  •	   Key	amino	acid	determination
                                               •	   Titration	assay,	dissociation	constant

                                               •		 GPCR	and	ion	channel	loops
    PROTEIN ENGINEERING & EXPRESSION           •		 Toxic	or	low-expressed	proteins	
                                               •		 Extra-cellular	domains	of	membrane	proteins
Bifunctional     ... makes your
Hybrid Protein   protein domain
technology...    study easier!




                 Scientists	 have	 always	 been	 dealing	 with	
                 quite	complex	proteins	involved	in	an	intricate	
                 environment	of	interactions.	
                 These	proteins	are	sometimes	unavailable	as	
                 functional	and	suitable	material.	

                 Rather	than	using	the	whole	protein	of	interest,	
                 the	 Bifunctional	 Hybrid	 Protein	 technology	
                 (BHP	 technology)	 allows	 the	 dissociation	 of	
                 the	different	structural	elements	of	a	protein.

                 The	target	domain	(in	yellow)	is	inserted	into	a	
                 protein	scaffold	(in	blue	&	green).	
                 By	 doing	 so,	 the	 protein-protein	 interaction	
                 environment	is	simplified	and	brought	into	an	
                 easily	 manageable	 unit,	 the	 BHP,	 for	 protein	
                 domain	studies.	

                 This	technology	fits	perfectly	well	in	application	
                 areas	for	which	protein	engineering	is	required	
                 or	for	which	interaction	characterizations	are	
                 pivotal.
“From the
                                target gene to the
                             customized antibody”
ANTIBODY DEVELOPMENT


                       The	 BHP	 technology	 allows	 the	 dissociation	 of	
                       an	antigen	in	domains,	subdomains	or	naturally	
                       constrained	polypeptides.	
                       These	de novo	antigens	can	be	used	to	generate	
                       customized	antibodies.	

                       The	 technology	 is	 relevant	 to	 raise,	 among	
                       others,	 antibodies	 against	 cryptic	 and	 non-
                       immunodominant	regions.

                       This	 way,	 ProGenosis	 technology	 enables	 the	
                       development	 of	 matched	 antibody	 pairs	 as	
                       well	 as	 neutralizing,	 agonist,	 antagonist	 and	
                       inhibitory	antibodies	for	therapeutic	purposes.

                       Moreover,	the	obtained	hybridoma	libraries	are	
                       directed	 against	 a	 specific	 region	 and	 are	 not	
                       spread	 through	 the	 entire	 antigen	 or	 focused	
                       against	an	immunodominant	region.
“Kill two birds
                                              with one stone”
ANTIBODY CHARACTERIZATION


                            ProGenosis	 has	 developed	 an	 innovative	
                            approach	 to	 identify	 with	 high	 accuracy	 the	
                            region	which	interacts	with	an	antibody.	

                            The	BHP	technology	enables	direct	mapping	of	
                            both	linear	or	non-linear	epitopes	in	only	one	
                            assay.
                            	
                            We	do	not	perform	the	mapping	using	synthetic	
                            overlapping	peptides	which	fail	to	restore	the	
                            structural	conformation.	
                            ProGenosis	constructs	an	expression	library	in	
                            which	different	fragment	lengths	of	the	target	
                            gene	are	produced	in	fully	soluble	and	folded	
                            forms	 within	 the	 scaffold	 environment.	Those	
                            different	fragments	display	the	same	region	in	
                            multiple	 folding-units.	 Consequently,	 the	 BHP	
                            mapping	procedure	pinpoints	the	best	antibody	
                            binding	target	conformation.

                            Moreover,	the	key	amino	acids	involved	in	the	
                            antibody	binding	could	be	determined	by	point	
                            mutations	 upon	 the	 exogenous	 insert.	 The	
                            result	 is	 cost-effectively	 used	 for	 intellectual	
                            property	 purposes	 and	 for	 therapeutic	 anti-
                            bodies	characterizations.

                            Eventually,	 the	 created	 BHPs,	 providing	 the	
                            epitope	 regions	 grafted	 into	 an	 enzymatic	
                            carrier,	 can	 be	 used	 as	 biotools	 during	 R&D	
                            processes	or	for	QC	purposes.
“The Sky is the limit”


                     ProGenosis	 demonstrated	 with	 several	 proteins	
                     that	 the	 BHP	 approach	 is	 a	 powerful	 tool	 to	
                     produce	difficult-to-express	proteins.	
PROTEIN EXPRESSION



                     Using	the	positive	drug-based	screening	system,	
                     some	 procaryotic,	 animal,	 human	 and	 plant	
                     proteins	 (from	 2kDa	 up	 to	 40	kDa)	 have	 been	
                     successfully	expressed	in	a	soluble	form.		

                     The	 technology	 notably	 enables	 the	 expression	
                     of	extra-cellular	loops	of	GPCRs	or	ion-channels-
                     related	proteins.

                     The	BHP	approach	can	be	very	relevant	in	X-ray	
                     crystallography.	Indeed,	the	technology	can	help	
                     to	increase	the	solubility	of	the	protein	of	interest	
                     (i.e.	from	1	mg/ml	up	to	100	mg/ml).	

                     Furthermore,	the	enzyme	activity	of	the	scaffold	
                     enables	to	discriminate	protein	crystal	from	salt	
                     crystal	 (the	 BHP	 specific	 substrate	 can	 diffuse	
                     through	the	crystal).
“Less for your
                                         courtesy and more
                                            for your purse”
BHP TECHNOLOGY BENEFITS


                          The	 target	 subdomain	 inserted	 into	 the	
                          proprietary	scaffold	is	displayed	within	a	protein	
                          environment	 which	 mimics	 wild-type	 protein	
                          constraints.	 It	 is	 often	 more	 difficult	 to	 achieve	
                          this	 kind	 of	 feature	 with	 fusions	 or	 chemical	
                          conjugations.

                          The	 enzymatic	 activity	 of	 the	 scaffold	 enables	
                          a	very	robust	and	efficient	positive	drug-based	
                          screening	 system.	 Indeed,	 the	 bacterial	 growth	
                          is	 BHP	 activity-dependant	 which	 makes	 the	
                          selection	of	fully	soluble	BHPs	easier.	

                          Insertion	of	an	exogenous	domain	into	the	scaf-
                          fold	induces	a	folding-dependant	mechanism.	
                          Consequently,	only	well-folded	and	active	BHPs	
                          are	selected.

                          Moreover,	 the	 proprietary	 scaffold	 (29	kDa)	
                          exhibits	 a	 highly	 permissive	 ability	 ranging	
                          from	 2	kDa	 up	 to	 40	kDa,	 is	 naturally	 protease-
                          resistant	 and	 shows	 a	 high	 yield	 of	 expression.	
                          This	 scaffold	 is	 a	 bacterial	 protein	 with	 no	
                          eukaryotic	homologue.
•	   ProGenosis	 offers	 customized	 services	 to	 fulfill	
                          your	R&D	project	requirements.

                     •		 The	   R&D	 work	 is	 milestones	 divided	 and	
                          you	 have	 the	 lead	 throughout	 the	 project	
                          development.	You	can	decide	to	go	on,	redirect	
YOUR ONE-STOP SHOP



                          or	stop	the	project	at	each	step	of	the	study.	You	
                          will	not	be	charged	for	the	unperformed	tasks.

                     •	   ProGenosis,	 a	 one-stop	 shop	 for	 antibody	
                          characterization	 and	 protein	 engineering:	 We	
                          can	work	for	you	from	the	gene	synthesis	to	the	
                          protein	purification.	

                     •		 In	 one	 work	 procedure,	 we	 can	 map	 linear	
                          and	 non-linear	 epitope	 without	 using	 high	
                          throughput	 clone	 sequencing.	 Moreover,	 this	
                          work	can	lead	to	key	amino	acid	determination.	

                     •		 Our	epitope	mapping	technology	uses	the	wild-
                          type	sequence	of	your	target	gene.	We	don’t	use	
                          synthetic	or	artificially	constrained	peptides.	So	
                          we	pinpoint	the	epitope	sequence	in	its	native	
                          environment.		

                     •		 ProGenosis	   provides	 customized	 biotools	 for	
                          QC,	fermentation	monitoring,	raising	polyclonal	
                          or	 monoclonal	 antibodies,	 IVD	 reagents,	 drug	
                          screening,	biosensor	reagents….
“Quick to act”


                   ProGenosis	is	a	biotechnology	company	located	in	
                   the	heart	of	Europe	in	the	Wallonian	part	of	Belgium.	
                   Based	in	Liège,	at	the	centre	of	the	Euregio	Meuse-
                   Rhine,	the	company	belongs	to	the	GIGA	cluster	and	
                   is	an	active	member	of	BioWin,	the	Health	Cluster	
                   of	Wallonia.
ABOUT PROGENOSIS



                   ProGenosis	provides	Life	Science	companies	with	R&D	
                   customized	services	in	its	core	business	field.	Our	
                   proprietary	technology	platform	is	geared	to	develop	 	
                   efficient,	 innovative	 and	 convenient	 biotools	    	
                   dedicated	to	the	determination	of	protein	interactions	
                   with	a	primary	focus	on	receptor-ligand	interactions	
                   and	protein	domain	studies.

                   ProGenosis	technology	has	been	validated	by	multiple	
                   research	projects	related	to	industrial	final	products	
                   such	as	therapeutic	antibodies,	IVD	reagents	or	
                   vaccine	components.
ProGenosis SA
Boulevard du Rectorat, 27b - B22
Sart-Tilman - 4000 Liège 1
Belgium

Tel +32 (0)4 361 33 29
Fax +32 (0)4 361 12 61
info@progenosis.com

www.progenosis.com

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ProGenosis Your Partner

  • 1. Your partner in Antibody development Antibody characterization Protein engineering & expression
  • 2. Interaction to be studied Extraction of the target domain Epidermal Growth Factor Receptor The BHP solution: insertion into the scaffold • Antigen production & customized antibodies ANTIBODY DEVELOPMENT • Antibodies against non-immunodominant regions • Antibodies against cryptic regions • Epitope mapping (linear and non-linear) ANTIBODY CHARACTERIZATION • Key amino acid determination • Titration assay, dissociation constant • GPCR and ion channel loops PROTEIN ENGINEERING & EXPRESSION • Toxic or low-expressed proteins • Extra-cellular domains of membrane proteins
  • 3. Bifunctional ... makes your Hybrid Protein protein domain technology... study easier! Scientists have always been dealing with quite complex proteins involved in an intricate environment of interactions. These proteins are sometimes unavailable as functional and suitable material. Rather than using the whole protein of interest, the Bifunctional Hybrid Protein technology (BHP technology) allows the dissociation of the different structural elements of a protein. The target domain (in yellow) is inserted into a protein scaffold (in blue & green). By doing so, the protein-protein interaction environment is simplified and brought into an easily manageable unit, the BHP, for protein domain studies. This technology fits perfectly well in application areas for which protein engineering is required or for which interaction characterizations are pivotal.
  • 4. “From the target gene to the customized antibody” ANTIBODY DEVELOPMENT The BHP technology allows the dissociation of an antigen in domains, subdomains or naturally constrained polypeptides. These de novo antigens can be used to generate customized antibodies. The technology is relevant to raise, among others, antibodies against cryptic and non- immunodominant regions. This way, ProGenosis technology enables the development of matched antibody pairs as well as neutralizing, agonist, antagonist and inhibitory antibodies for therapeutic purposes. Moreover, the obtained hybridoma libraries are directed against a specific region and are not spread through the entire antigen or focused against an immunodominant region.
  • 5. “Kill two birds with one stone” ANTIBODY CHARACTERIZATION ProGenosis has developed an innovative approach to identify with high accuracy the region which interacts with an antibody. The BHP technology enables direct mapping of both linear or non-linear epitopes in only one assay. We do not perform the mapping using synthetic overlapping peptides which fail to restore the structural conformation. ProGenosis constructs an expression library in which different fragment lengths of the target gene are produced in fully soluble and folded forms within the scaffold environment. Those different fragments display the same region in multiple folding-units. Consequently, the BHP mapping procedure pinpoints the best antibody binding target conformation. Moreover, the key amino acids involved in the antibody binding could be determined by point mutations upon the exogenous insert. The result is cost-effectively used for intellectual property purposes and for therapeutic anti- bodies characterizations. Eventually, the created BHPs, providing the epitope regions grafted into an enzymatic carrier, can be used as biotools during R&D processes or for QC purposes.
  • 6. “The Sky is the limit” ProGenosis demonstrated with several proteins that the BHP approach is a powerful tool to produce difficult-to-express proteins. PROTEIN EXPRESSION Using the positive drug-based screening system, some procaryotic, animal, human and plant proteins (from 2kDa up to 40 kDa) have been successfully expressed in a soluble form. The technology notably enables the expression of extra-cellular loops of GPCRs or ion-channels- related proteins. The BHP approach can be very relevant in X-ray crystallography. Indeed, the technology can help to increase the solubility of the protein of interest (i.e. from 1 mg/ml up to 100 mg/ml). Furthermore, the enzyme activity of the scaffold enables to discriminate protein crystal from salt crystal (the BHP specific substrate can diffuse through the crystal).
  • 7. “Less for your courtesy and more for your purse” BHP TECHNOLOGY BENEFITS The target subdomain inserted into the proprietary scaffold is displayed within a protein environment which mimics wild-type protein constraints. It is often more difficult to achieve this kind of feature with fusions or chemical conjugations. The enzymatic activity of the scaffold enables a very robust and efficient positive drug-based screening system. Indeed, the bacterial growth is BHP activity-dependant which makes the selection of fully soluble BHPs easier. Insertion of an exogenous domain into the scaf- fold induces a folding-dependant mechanism. Consequently, only well-folded and active BHPs are selected. Moreover, the proprietary scaffold (29 kDa) exhibits a highly permissive ability ranging from 2 kDa up to 40 kDa, is naturally protease- resistant and shows a high yield of expression. This scaffold is a bacterial protein with no eukaryotic homologue.
  • 8. ProGenosis offers customized services to fulfill your R&D project requirements. • The R&D work is milestones divided and you have the lead throughout the project development. You can decide to go on, redirect YOUR ONE-STOP SHOP or stop the project at each step of the study. You will not be charged for the unperformed tasks. • ProGenosis, a one-stop shop for antibody characterization and protein engineering: We can work for you from the gene synthesis to the protein purification. • In one work procedure, we can map linear and non-linear epitope without using high throughput clone sequencing. Moreover, this work can lead to key amino acid determination. • Our epitope mapping technology uses the wild- type sequence of your target gene. We don’t use synthetic or artificially constrained peptides. So we pinpoint the epitope sequence in its native environment. • ProGenosis provides customized biotools for QC, fermentation monitoring, raising polyclonal or monoclonal antibodies, IVD reagents, drug screening, biosensor reagents….
  • 9. “Quick to act” ProGenosis is a biotechnology company located in the heart of Europe in the Wallonian part of Belgium. Based in Liège, at the centre of the Euregio Meuse- Rhine, the company belongs to the GIGA cluster and is an active member of BioWin, the Health Cluster of Wallonia. ABOUT PROGENOSIS ProGenosis provides Life Science companies with R&D customized services in its core business field. Our proprietary technology platform is geared to develop efficient, innovative and convenient biotools dedicated to the determination of protein interactions with a primary focus on receptor-ligand interactions and protein domain studies. ProGenosis technology has been validated by multiple research projects related to industrial final products such as therapeutic antibodies, IVD reagents or vaccine components.
  • 10. ProGenosis SA Boulevard du Rectorat, 27b - B22 Sart-Tilman - 4000 Liège 1 Belgium Tel +32 (0)4 361 33 29 Fax +32 (0)4 361 12 61 info@progenosis.com www.progenosis.com