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Spectral Databases
 Motivations, State of the Art, Visions



               Workshop
      Advances in Spectroradiometry
        Madrid, 3rd – 4th Dec. 2009




         ahueni@geo.uzh.ch

            www.specchio.ch



                                           1
Outline

•  Vision of the Complete Observing System
•  Vision of Spectral Databases
•  State of the Art of Spectral Databases



•  Architecture and essential Functionality
•  The Metadata Model

•  Input and Data Storage

•  Metadata Editing

•  Retrieval, Processing and Output

•  Data Exchange

•  Administration Tools

•  GIS Connectivity

•  SPECCHIO Online

•  Data Policy
•  Software availability




                                               2
Vision of the Complete Observing System




                                                             Understanding the Earth system
                                                               and the changes induced by
                                                            anthropogenic and natural causes 




National Research Council, Earth Science and Applications                                   GEO, Global earth observation system of systems
from Space: National Imperatives for the Next Decade and                                    GEOSS: 10-Year implementation plan reference
Beyond. Washington, DC: The National Academies Press,                                       document. 2200 AG Noordwijk, The Netherlands ESA
2007.
                                                                                      Publications Division 2005.
                    3
Vision Statement
                                                                             
                     Vision of the Complete Observing System
                                  Enable a healthy public, economy,
                                                                    
                                                   and planet through an integrated,
                                                    comprehensive, and sustained
                                                      Earth observation system.




Acquisition of Earth
surface information in
support of Earth System
Science.
                                                                                                                              Image sources: 
                                                                                                                              earthobservatory.nasa.gov
                    CENR/IWGEO. 2005. Strategic Plan for the U.S. Integrated Earth Observation System, National Science and   www.boeing.com
                           Technology Council Committee on Environment and Natural Resources, Washington, DC. 
               jaxa.jp
            4
The Complete Observing System

                                                          Archiving and
                               Sensors and Platforms
   Data Management



 Spacebased




 Airborne




   In situ

                                                           Processing



                                                           Processors
Image sources: 
Google Earth
www.boeing.com
                                                                           5
Implementing the System of Systems: Data Grids
                                                                 




                                                          Clearing House
        Data clearing houses present
        users with a uniform interface
        to the heterogeneous
        storage/service components
        of the data grid. 
                                                               Users


E. J. Christian, "GEOSS Architecture Principles and the
GEOSS Clearinghouse," IEEE Systems Journal, vol. 2,
pp. 333 - 337, 2008.
                                                       6
Data Assimilation & CAL/VAL in a Data Grid
                                                  Vision
                      Data grids encompass spacebased, airborne and in situ data,
                  offering the possibility of seamless data integration at different scales
                    of observation and thus facilitating data assimilation & calibration/
                               validation processes as standard operations. 


                         Metadata
                  Metadata
                 Metadata




                                                 Assimilation 
                                                      &
                                                  CAL/VAL
                                                 Processes  




See also CEOS CAL/VAL activities: 
ceoswgcv-ivos.org/
                                                                                              7
Spectral Databases: Components of a Complete
                      Observing System

           Archiving and
        Data Management
        Archiving and
      Data Management




Image sources: 
• GEO, Global earth observation system of systems GEOSS: 10-Year implementation plan reference document. 2200 AG Noordwijk, The Netherlands ESA
Publications Division 2005.
• www.brest.ird.fr/us025/observatoire/station_meteo_sao_tome.jpg

                                                                                                                                                  8
Definition: Spectral Databases
                                                                   

                                                Spectral databases are systems for the
                                               organised storage of spectral signatures
                                                accompanied by associated metadata. 


                                                                     Metadata




A. Hueni, et al. "The spectral database SPECCHIO for improved long term usability and data sharing," Computers & Geosciences, vol. 35(3), pp. 557-565, 2009.
   9
Metadata

Metadata are the key to long-term usage and datasharing.




                                                       Metadata




                                                                   10
Metadata Space
Metadata define a multi-dimensional space; a primary resource is
identified by its metadata parameters and thus has a defined position in
metadata space.




                                                                         11
Vision of Spectral Databases
                              
 Spectral information is at the scientistʼs fingertips
 and comprehensive metadata and automatically
derived quality indicators facilitate the assessment
 of data quality and hence their suitability for new
                    applications.




                                                        Clearing House




                                                                  Scientist




                                                                               12
Roadmap to Data Sharing and Long-term Usage



                                                                              Registration as
                                                                                 data grid
                                                                               component
                                                                              (e.g. GEOSS)
                                                             Homogenized
                                                             metadata for
                                                            eased inclusion
                                                              as data grid
                                                                service 

                                          Automated
                                        quality indicator
                                          generation
                         Spectral
                     database setup
                    for the organised
                        storage of
                    spectral data and
                         metadata
Data Acquisition
of high accuracy,
well-documented
  spectral data




                                                                                                13
State of the Art of Spectral Databases
                                              
Logo
   Institute
             Online
   Public
   Active
   # of           # of        Reference
        www
                                                 spectra*
      install.
        RSL, University of       ✔
        ✔
        ✔
       3316
            15
      A. Hueni, et al. "The spectral
        Zurich,                                                                         database SPECCHIO for improved
        Switzerland
                                                                    long term usability and data
        www.specchio.ch
                                                                sharing," Computers &
                                                                                        Geosciences, vol. 35(3), pp.
                                                                                        557-565, 2009.


        DLR,                     ✔
        ✔
        ✔
       2008
            1
       Becvar, M. et al, (2006 - 2008) DLR
        Oberpfaffenhofen,                                                               Spectral Archive. Online at: http://
        Germany
                                                                        cocoon.caf.dlr.de/intro_en.html,
        cocoon.caf.dlr.de
                                                              accessed on: 25.11.2009.


        SSI, Australia
          ✔
        ✔
        ✘
       A few            1
       Ferwerda, J. et al, 2006. A free
        www.hyperspectra                                      dozen
                    online reference library for
        l.info/
                                                                        hyperspectral reflectance
                                                                                        signatures. SPIE Newsroom, 1-2,
                                                                                        http://newsroom.spie.org/
                                                                                        x5275.xml.


        SSD, Darwin,             ✘
        ✘
                >> 1000
          1
       Pfitzner, K., et al, 2008, 29.09. -
        Australia
                                   ✔
                                 03.10.2008. SSD's Spectral Library
        environment.gov.a                                                               Database. In: Proceedings 14th
        u/ssd/research/                                                                 Australasian Remote Sensing and
        protect/                                                                        Photogrammetry Conference,
        rehabilitation.html
                                                            Darwin, AU.


                                                                      *   Available in the online system on 25.11.2009
 14
State of the Art of Spectral Databases: Technology
                                                         

Logo
        Database
     Interface
      Local          Import formats
      Export formats
                                           installation
                                           possible

             MySQL
        Java and PHP
   ✔
             ASD binary, GER, 
   CSV
                                                          ENVI SLB, 
          ENVI SLB
                                                          ASCII,
              XML
                                                          XML



             ?
            Web
            ✘
             ASD binary, ASCII
   ?



             MySQL
        PHP
            ✘
             ASD binary
          ASCII
                                                          ASD text
            ENVI SLB
                                                          GER, ASCII
          JCAMP
                                                          ENVI SLB



             SQL Server
   ?
              ✘
             ASD binary
          ?




                                                                                                 15
Critical Design Criteria

•     Extendable, generic data model
•     Defined value sets for categorical variables
•     Native file reading routines for automatic metadata generation
•     Intuitive interface for metadata editing with minimal user interaction
      (multiple updates)
•     Data retrieval via flexible metadata searches


                             Success Criteria

 •    Users can accept changes in their traditional workflow
 •    Users will only enter their data in a well-documented fashion if the
      user interfaces are friendly and quick
 •    Spectral databases must become the ʻone stop shopʼ for spectral
      signatures within and across institutions.



                                                                               16
SPECCHIO: RSLʼs Spectral Database




A. Hueni, et al. "The spectral database SPECCHIO for improved long term usability and data sharing," Computers & Geosciences, vol. 35(3), pp. 557-565, 2009.




                                                                                                                                                                17
Main components of the spectral database SPECCHIO




                                                       Query Builder
       Metadata Editor




       Data Loader
                                                 Space Network Processor




Instrumentation Administration
   File Export
         Data Report
                                                                            18
SPECCHIO Architecture




Setup of the SPECCHIO online system




                                       19
SPECCHIO
 Metadata
 Sources




            20
Data Input
                                      



                                          SPECCHIO Java Application




                                                SPECCHIO
                                                 Spectral 
                                                 Database

     Spectral files
          &
user defined structures
                          File system


                                                                       21
Storage of
spectrodirectional data




                           22
Metadata Editing



                    Easy selections via

                     Spectral Data Browser 




                                               23
Metadata Editing

                    -  Multiple updates




                                           24
Selected Metadata of Spectral Data

                              Spatial position per spectrum.
                              Used for GIS, sun angle

                              calculations and spatial 

                              searches.




                              Automatic calculation of

                              sensor and illumination

                              geometry (in case of
                              FIGOS and location/time
                              is known respectively).


                             General sampling information.




                                                          25
Retrieval: Spectral Data Browser
                               




                                   26
Retrieval: Metadata Space Restrictions
                                     




                                         27
Retrieval: Metadata Space Restrictions
                                     




                                         28
Processing: The Space Network
                                                          




          Components:
          •  Nodes: spaces (data sources/sinks) and processing modules
          •  Edges: directed connections between nodes




A. Hueni, M. Kneubuehler, J. Nieke, and K. Itten, "PROCESSING EXTENSION FOR THE SPECTRAL DATABASE SPECCHIO," in EARSeL SIG IS,
Tel Aviv, Israel, 2009.
                                                                                                                                 29
Processing: Creating Spaces
                                           




Query Builder
                          Space Network Processor
   30
Processing & Output: The Space Network Example




                                                  31
Available Modules in the Space Network Processor
                                                    

•     Radiance to Reflectance Transformation
•     Reference Panel Correction Factors
•     Correct for Reference Panel Non-Idealness
•     Delta (A-B as matrix operation)
•     Waveband Filter 
•     Broadband and Narrowband Filters
•     Visualisation: 
      Spectral Line Plot, Spectral Scatter Plot , Gonio Sampling Points
         Plot, Gonio Hemisphere Explorer, Time Line Plot, Time Line
         Explorer
•     File Export




                                                                          32
Output: Visualisation of spectrodirectional data
    Interactive Gonio Hemisphere Explorer in SPECCHIO




A. Hueni, S. Rey, D. Schläpfer, J. Schopfer, and M. Kneubuehler, "VISUALISATION, PROCESSING AND STORAGE OF SPECTRODIRECTIONAL DATA
BASED ON THE SPECTRAL DATABASE SPECCHIO," in IGARSS 09, Cape Town, South Africa, 2009.
                                              33
Output: Spectral Data Report
                           




                               34
Output: CSV and ENVI SLB




                            35
Data Exchange between SPECCHIO Instances
                                       

     Central Server @ RSL
                                              SPECCHIO Online Server
                                                                                             




SPECCHIO
                   SPECCHIO
                                SPECCHIO
                  SPECCHIO
   Edu
                       Prod
                                    Prod
                       Test




     Workstation @ RSL
                                                      Workstation @3rd
                                                                                  party


            SPECCHIO
                                                             SPECCHIO




A. Hueni, T. Malthus, M. Kneubuehler, and M. Schaepman, "Data Exchange between distributed Spectral
Databases," Computers & Geosciences, submitted.




                                                                                                            36
Data Exchange between SPECCHIO Instances
                                       




                    Automated export/import of spectral sampling
                    campaigns including the whole metadata
                    context using XML style files.




                                                                   37
Administration Tools: Instrumentation




                                         38
Administration Tools: Instrumentation




                                         39
GIS Connectivity
                                            



-  ODBC connection
-  Access to all tables
-  Spatial mapping




                           Mapping of sampling locations using ArcMap (ESRI)


                                                                                40
SPECCHIO Online: www.specchio.ch
-  Personal accounts via www.specchio.ch
-  Upload your own spectra, browse and download all spectra in the online database




                                                                                      41
SPECCHIO Online

Currently 86 users world wide* 




                                              * Stats from 29.11.2009 
                                                                          42
Data Policy
                                              
-  Data on the online system is freely accessible (read-only for all, full access for owner)
-  Import/Export function for SPECCHIO systems allows to easily include our own data

   in the online system (exact copy including full metadata context) 




                                                                                                43
Software availability
                                            
-  Online user account creation
-  Java software download 
-  Full installation package for local installation available: email admin@specchio.ch




                                                                                          44
Get a Leaflet ….
              




                  45
Questions?




Get your personal SPECCHIO account for the online SPECCHIO system by
                            browsing to: 

                        www.specchio.ch




                                                                       46
“Data are unstructured facts and figures. When they have been organised or
                  processed, they become information” –


                Organise your spectral data.




                                                                            47

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Conferencia 9 andreas_hueni

  • 1. Spectral Databases Motivations, State of the Art, Visions Workshop Advances in Spectroradiometry Madrid, 3rd – 4th Dec. 2009 ahueni@geo.uzh.ch www.specchio.ch 1
  • 2. Outline •  Vision of the Complete Observing System •  Vision of Spectral Databases •  State of the Art of Spectral Databases •  Architecture and essential Functionality •  The Metadata Model •  Input and Data Storage •  Metadata Editing •  Retrieval, Processing and Output •  Data Exchange •  Administration Tools •  GIS Connectivity •  SPECCHIO Online •  Data Policy •  Software availability 2
  • 3. Vision of the Complete Observing System Understanding the Earth system and the changes induced by anthropogenic and natural causes National Research Council, Earth Science and Applications GEO, Global earth observation system of systems from Space: National Imperatives for the Next Decade and GEOSS: 10-Year implementation plan reference Beyond. Washington, DC: The National Academies Press, document. 2200 AG Noordwijk, The Netherlands ESA 2007. Publications Division 2005. 3
  • 4. Vision Statement Vision of the Complete Observing System Enable a healthy public, economy, and planet through an integrated, comprehensive, and sustained Earth observation system. Acquisition of Earth surface information in support of Earth System Science. Image sources: earthobservatory.nasa.gov CENR/IWGEO. 2005. Strategic Plan for the U.S. Integrated Earth Observation System, National Science and www.boeing.com Technology Council Committee on Environment and Natural Resources, Washington, DC. jaxa.jp 4
  • 5. The Complete Observing System Archiving and Sensors and Platforms Data Management Spacebased Airborne In situ Processing Processors Image sources: Google Earth www.boeing.com 5
  • 6. Implementing the System of Systems: Data Grids Clearing House Data clearing houses present users with a uniform interface to the heterogeneous storage/service components of the data grid. Users E. J. Christian, "GEOSS Architecture Principles and the GEOSS Clearinghouse," IEEE Systems Journal, vol. 2, pp. 333 - 337, 2008. 6
  • 7. Data Assimilation & CAL/VAL in a Data Grid Vision Data grids encompass spacebased, airborne and in situ data, offering the possibility of seamless data integration at different scales of observation and thus facilitating data assimilation & calibration/ validation processes as standard operations. Metadata Metadata Metadata Assimilation & CAL/VAL Processes See also CEOS CAL/VAL activities: ceoswgcv-ivos.org/ 7
  • 8. Spectral Databases: Components of a Complete Observing System Archiving and Data Management Archiving and Data Management Image sources: • GEO, Global earth observation system of systems GEOSS: 10-Year implementation plan reference document. 2200 AG Noordwijk, The Netherlands ESA Publications Division 2005. • www.brest.ird.fr/us025/observatoire/station_meteo_sao_tome.jpg 8
  • 9. Definition: Spectral Databases Spectral databases are systems for the organised storage of spectral signatures accompanied by associated metadata. Metadata A. Hueni, et al. "The spectral database SPECCHIO for improved long term usability and data sharing," Computers & Geosciences, vol. 35(3), pp. 557-565, 2009. 9
  • 10. Metadata Metadata are the key to long-term usage and datasharing. Metadata 10
  • 11. Metadata Space Metadata define a multi-dimensional space; a primary resource is identified by its metadata parameters and thus has a defined position in metadata space. 11
  • 12. Vision of Spectral Databases Spectral information is at the scientistʼs fingertips and comprehensive metadata and automatically derived quality indicators facilitate the assessment of data quality and hence their suitability for new applications. Clearing House Scientist 12
  • 13. Roadmap to Data Sharing and Long-term Usage Registration as data grid component (e.g. GEOSS) Homogenized metadata for eased inclusion as data grid service Automated quality indicator generation Spectral database setup for the organised storage of spectral data and metadata Data Acquisition of high accuracy, well-documented spectral data 13
  • 14. State of the Art of Spectral Databases Logo Institute Online Public Active # of # of Reference www spectra* install. RSL, University of ✔ ✔ ✔ 3316 15 A. Hueni, et al. "The spectral Zurich, database SPECCHIO for improved Switzerland long term usability and data www.specchio.ch sharing," Computers & Geosciences, vol. 35(3), pp. 557-565, 2009. DLR, ✔ ✔ ✔ 2008 1 Becvar, M. et al, (2006 - 2008) DLR Oberpfaffenhofen, Spectral Archive. Online at: http:// Germany cocoon.caf.dlr.de/intro_en.html, cocoon.caf.dlr.de accessed on: 25.11.2009. SSI, Australia ✔ ✔ ✘ A few 1 Ferwerda, J. et al, 2006. A free www.hyperspectra dozen online reference library for l.info/ hyperspectral reflectance signatures. SPIE Newsroom, 1-2, http://newsroom.spie.org/ x5275.xml. SSD, Darwin, ✘ ✘ >> 1000 1 Pfitzner, K., et al, 2008, 29.09. - Australia ✔ 03.10.2008. SSD's Spectral Library environment.gov.a Database. In: Proceedings 14th u/ssd/research/ Australasian Remote Sensing and protect/ Photogrammetry Conference, rehabilitation.html Darwin, AU. * Available in the online system on 25.11.2009 14
  • 15. State of the Art of Spectral Databases: Technology Logo Database Interface Local Import formats Export formats installation possible MySQL Java and PHP ✔ ASD binary, GER, CSV ENVI SLB, ENVI SLB ASCII, XML XML ? Web ✘ ASD binary, ASCII ? MySQL PHP ✘ ASD binary ASCII ASD text ENVI SLB GER, ASCII JCAMP ENVI SLB SQL Server ? ✘ ASD binary ? 15
  • 16. Critical Design Criteria •  Extendable, generic data model •  Defined value sets for categorical variables •  Native file reading routines for automatic metadata generation •  Intuitive interface for metadata editing with minimal user interaction (multiple updates) •  Data retrieval via flexible metadata searches Success Criteria •  Users can accept changes in their traditional workflow •  Users will only enter their data in a well-documented fashion if the user interfaces are friendly and quick •  Spectral databases must become the ʻone stop shopʼ for spectral signatures within and across institutions. 16
  • 17. SPECCHIO: RSLʼs Spectral Database A. Hueni, et al. "The spectral database SPECCHIO for improved long term usability and data sharing," Computers & Geosciences, vol. 35(3), pp. 557-565, 2009. 17
  • 18. Main components of the spectral database SPECCHIO Query Builder Metadata Editor Data Loader Space Network Processor Instrumentation Administration File Export Data Report 18
  • 19. SPECCHIO Architecture Setup of the SPECCHIO online system 19
  • 21. Data Input SPECCHIO Java Application SPECCHIO Spectral Database Spectral files & user defined structures File system 21
  • 23. Metadata Editing Easy selections via
 Spectral Data Browser 23
  • 24. Metadata Editing -  Multiple updates 24
  • 25. Selected Metadata of Spectral Data Spatial position per spectrum. Used for GIS, sun angle
 calculations and spatial 
 searches. Automatic calculation of
 sensor and illumination
 geometry (in case of FIGOS and location/time is known respectively). General sampling information. 25
  • 27. Retrieval: Metadata Space Restrictions 27
  • 28. Retrieval: Metadata Space Restrictions 28
  • 29. Processing: The Space Network Components: •  Nodes: spaces (data sources/sinks) and processing modules •  Edges: directed connections between nodes A. Hueni, M. Kneubuehler, J. Nieke, and K. Itten, "PROCESSING EXTENSION FOR THE SPECTRAL DATABASE SPECCHIO," in EARSeL SIG IS, Tel Aviv, Israel, 2009. 29
  • 30. Processing: Creating Spaces Query Builder Space Network Processor 30
  • 31. Processing & Output: The Space Network Example 31
  • 32. Available Modules in the Space Network Processor •  Radiance to Reflectance Transformation •  Reference Panel Correction Factors •  Correct for Reference Panel Non-Idealness •  Delta (A-B as matrix operation) •  Waveband Filter •  Broadband and Narrowband Filters •  Visualisation: Spectral Line Plot, Spectral Scatter Plot , Gonio Sampling Points Plot, Gonio Hemisphere Explorer, Time Line Plot, Time Line Explorer •  File Export 32
  • 33. Output: Visualisation of spectrodirectional data Interactive Gonio Hemisphere Explorer in SPECCHIO A. Hueni, S. Rey, D. Schläpfer, J. Schopfer, and M. Kneubuehler, "VISUALISATION, PROCESSING AND STORAGE OF SPECTRODIRECTIONAL DATA BASED ON THE SPECTRAL DATABASE SPECCHIO," in IGARSS 09, Cape Town, South Africa, 2009. 33
  • 35. Output: CSV and ENVI SLB 35
  • 36. Data Exchange between SPECCHIO Instances Central Server @ RSL SPECCHIO Online Server SPECCHIO SPECCHIO SPECCHIO SPECCHIO Edu Prod Prod Test Workstation @ RSL Workstation @3rd party SPECCHIO SPECCHIO A. Hueni, T. Malthus, M. Kneubuehler, and M. Schaepman, "Data Exchange between distributed Spectral Databases," Computers & Geosciences, submitted. 36
  • 37. Data Exchange between SPECCHIO Instances Automated export/import of spectral sampling campaigns including the whole metadata context using XML style files. 37
  • 40. GIS Connectivity -  ODBC connection -  Access to all tables -  Spatial mapping Mapping of sampling locations using ArcMap (ESRI) 40
  • 41. SPECCHIO Online: www.specchio.ch -  Personal accounts via www.specchio.ch -  Upload your own spectra, browse and download all spectra in the online database 41
  • 42. SPECCHIO Online Currently 86 users world wide* * Stats from 29.11.2009 42
  • 43. Data Policy -  Data on the online system is freely accessible (read-only for all, full access for owner) -  Import/Export function for SPECCHIO systems allows to easily include our own data
 in the online system (exact copy including full metadata context) 43
  • 44. Software availability -  Online user account creation -  Java software download -  Full installation package for local installation available: email admin@specchio.ch 44
  • 45. Get a Leaflet …. 45
  • 46. Questions? Get your personal SPECCHIO account for the online SPECCHIO system by browsing to: www.specchio.ch 46
  • 47. “Data are unstructured facts and figures. When they have been organised or processed, they become information” –
 Organise your spectral data. 47