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Text Mining Using JBoss Rules
1. Text Mining Using JBoss Rules with a BioMedical Example Mark Maslyn Consultant [email_address] To Be Presented 2/2/2010 at Denver Open Source User Group
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3. What Are Proteins ? Chains of Amino Acids that fold into unique shapes that determine what other proteins will interact with them. Diagram From WikiMedia Commons
10. The Problem is: There's Too Much Data 2,000 New References Every Day
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15. Example Production Rule (BN Format) with Expected Order S p1 a p2 Where : p1 and p2 = different protein names (e.g. p53, BRCA1, etc) a = action verb (e.g. regulate, interact, modulate, bind, etc)
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17. Text Mining Flow Chart Retrieve Parse Filter and TransformKeywords Rules to Evaluate Output
18. Cytoscape One Level Network Diagram Statistics: 200 References 7 Unique Links One Level Tree
19. Cytoscape Two Level Network Diagram Statistics: 1600 References 25 Unique Links Two Level Tree
20. Further Information Mark Maslyn: [email_address] http://www.slideshare.net/mmaslyn/text-mining-using-jboss-rules-2773851