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Direct Detection of Biofilms


        Mark Fornalik
      Ethox International




                               1
What is Biofouling?
•   Biofouling* is the unwanted adhesion of
    bacteria or other organisms onto surfaces of
    solution-handling systems
•   Biofouling is not necessarily uniform in
    space & time
•   Biofouling may contain significant amounts
    of inorganic materials held together by the
    polymeric matrix
*(Charackis & Marshall, Biofilms, 1990)

    Biofouling can be extraordinarily difficult to detect
                                                            2
                       and control
What Problems Does Biofouling
               Cause?
• Off taste in food & beverage products
• Product spoilage
• Extended downtimes to clean the process
• More aggressive process cleaning
  methods
• Random microbiology problems


                                            3
Current Biofilm Detection Methods
• Product sampling:
  – Taste (for food & beverage products)
  – Microbiological plating
• Process sampling:
  – Microbiological plating of water rinse effluent
  – Microbiological plating of process swab
    samples
  – ATP or PCR analysis of swab samples
  All of these methods require organisms to grow in
                                                      4
             culture in the microbiology lab
Problems with Current Biofilm Test
             Methods
• Biofilms can be remarkably difficult to find and sample in large-scale
  manufacturing processes (i.e., pipes and tanks)
• Even if recovered, biofilms tend not to grow in culture in the
  microbiology lab
• Culturing techniques, if they work, only indicate whether an
  organism is dead, not if the organism is dormant or even if the dead
  organism has been removed from the process
• Dead organisms on a process surface serve as a nutrient source for
  the wave of microorganisms
• Biofilms will sacrifice the outermost layer of organisms to cleaning
  chemicals but protect the hidden, innermost layer of organisms from
  CIP methods
• High-tech methods of ATP and PCR analysis require a minimum
  number of cells in order to generate a signal; very few cells are
  necessary to generate an abundance of biofilm exopolymer (“glue”)
  and biofilms can evade detection by ATP and PCR methods

                                                                       5
Biofilm Locations
• Biofilms can be found in:
  –   Water systems
  –   Food & beverage plant product lines
  –   Dairy processing plants
  –   Pharmaceutical manufacturing processes
  –   Cosmetics and nutraceuticals plants
  –   Raw materials suppliers’ processes
  –   Cleaning chemicals
  –   Steam lines
  –   Fine & specialty chemicals plants
  –   Pulp & paper mills
  –   Heat exchangers
                                               6
Biofilm-Related Contaminants
• Cells (possibly pathogenic)
• Anions (acetate, formate, nitrate, etc.)
• Proteins, glycoproteins, carbohydrates, fatty
  acids
• Enzymes
• Surfactants
• Organic and inorganic particles
• Substrate degradation (metal & plastics
  corrosion)
                                                  7
Biofouling Rate

                                                                        Physical
                                                                        quality of
                                                                        product
fouling mass




                                  physical                              degrades
                                                                        Chemical
                            chemical                                    quality of
                                                    secondary fouling
                                                                        product
                                                                        degrades
               induction period



                                             time




         The goal of cleaning is to return the system to the
                  induction period level of fouling

                                                                              8
Fouling Cell Techology
• Does not depend on microbial culturing
  techniques to detect biofilms
• Biofilms are not removed from their surface but
  instead analyzed while still in place on the
  colonized surface
• Fouling cell analysis by reflection infrared
  spectroscopy detects primarily the biofilm
  exopolymer, not the organisms, and as a result
  detects the very earliest stages of biofilm
  formation

                                                    9
Fouling Cell: Sanitary Cross with
           Polished End Caps
Insoluble material
deposits on pipe wall
and mirror-polished end
                                                                Mirror-polished
cap during product flow
                                                                end caps




                                     Product Flow




     Biofouling that adsorbs on pipe wall also adsorbs on mirror-polished end
                              caps (fouling cell discs)
                                                                                  10
Measuring Wall Fouling


                                                  Fourier
                                                  transform
                                                  infrared beam

Spectrum
from
reflected
infrared
beam

             Fouled end cap (fouling cell disc)


                                                             11
Fouling Identification




FTIR provides a “chemical fingerprint” of the biofilm, as well as
               an indication of biofilm amount                      12
Fouling Cell Analysis Tracks Biofilm
  Chemistry Changes Over Time
             0.020      *Subtraction Result:ir1848, 610 NRX disc #26, 3-month exposure, no clean
                        *Subtraction Result:ir1896, 610 NRX, 14 batches (4 days), disc #7 (1/30 - 2/2/98)
             0.019      *Subtraction Result:ir2288, 610, NRX, #10, 24 hours, 5 batches, 2/26 - 2/27/98
                        *Subtraction Result:ir1974, disc 10, 610 NRX, 1 batch, 4 hrs, without santoprene gasket
             0.018

             0.017

             0.016

             0.015

             0.014

             0.013

             0.012

             0.011

             0.010

             0.009

             0.008

             0.007
Absorbance




             0.006

             0.005

             0.004

             0.003
                                                                                                                                                       6 mo
             0.002

             0.001

             0.000

             -0.001
                                                                                                                                                       24 hrs
             -0.002

             -0.003

             -0.004
                                                                                                                                                       8 hrs
             -0.005

             -0.006

             -0.007
                                                                                                                                                       2 hrs
             -0.008

                      4000             3800                3600               3400                3200            3000   2800   2600   2400             2200       2000   1800   1600   1400   1200   1000   800   600
                                                                                                                                              Wavenumbers (cm-1)




                      Biofilm chemistry changes to cleaning-resistant exopolymer upon aging                                                                                                                              13
Fouling Cell Analysis Tracks Impact of
Improved Mechanical Cleaning on Biofilm
             0.0080
             0.0075

             0.0070

             0.0065

             0.0060
                                                    Old water flush
             0.0055

             0.0050

             0.0045
Absorbance




             0.0040

             0.0035
                                       Improved water
             0.0030

             0.0025
                                            flush
             0.0020

             0.0015

             0.0010

             0.0005

             0.0000

             -0.0005
             -0.0010
                          3500      3000     2500              2000   1500   1000
                                               Wavenumbers (cm-1)



               Peak height data correlate to effectiveness of cleaning: the smaller
                           the peak, the more effective the cleaning
                                                                                      14
Biofilm Resistance to Cleaning
• Standard CIP methods may not remove biofilm
• Biofilms able to grow after 8 months desiccation
• Biofilms withstood 80C or higher water
  temperatures
• Biofilms withstood 20, 50 and 200 ppm chlorine,
  25 ppm iodine
∗ Food Protection Report, 7(5):8 (1991)




                                                 15
Bacteria Populations in a Pipe
TRADITIONAL
SAMPLING: 1% of total
bacteria population
inside of pipe is
planktonic (free
swimming organisms
from bulk solution)

                                           FOULING CELL SAMPLING:
                                           99% of total bacteria
                                           population inside of pipe is
                                           sessile (attached biofilm on
                                           the wall of the pipe)



                        Sessile organisms (biofilms) can
                          be very resistant to cleaning
                                                                          16
45° Ultrapure Water Biofouling
  C
    1 day             2 days




                                 17
    4 days            9 days
Biofilm Resistance to Cleaning:
       Bleach Treatment
Biofilm
remaining after
bleach treatment




                                  18
Fouling Cell Analysis Directly
                        Measures Impact of Chemical
                           Cleaning Parameters
                              Impact of temperature
                      100%
                       90%
cleaning efficiency




                       80%
                       70%
                       60%
                       50%
                       40%
                       30%
                       20%                                                            Impact of concentration
                       10%
                         0%                                                        100%
                                  25 C     45 C       65 C                          90%



                                                             cleaning efficiency
                                         5% NaOH                                    80%
                                                                                    70%
                                                                                    60%
                       The higher the bars,                                         50%
                                                                                    40%
                       the more efficient the                                       30%
                                                                                    20%
                       cleaning                                                     10%
                                                                                     0%
                                                                                           0.2%         1.0%        5.0%
                                                                                                  NaOH wt% @ 60 C

                                                                                                                           19
Case Study: Mapping Process CIP
      Efficacy in a Brewery
                                                          FTIR spectra of
                                                          fouling cells placed in
                                                          5 locations of a
                                                          brewery process
                                                          (stages A through E)
                                                          for 8 weeks




FTIR & epifluorescence of fouling cells can provide cleaning efficacy data from
                           end to end of a process

                                                                                    20
Process Mapping in a Brewery: FTIR
     Peak Heights by Location
                      0.05



                     0.045



                      0.04



                     0.035



                      0.03
  absorbance units




                     0.025



                      0.02



                     0.015



                      0.01



                     0.005



                        0
                                   A         B   C   D     E


                             Process Start               Packaging
                                                                     21
Brewery Wort Line




2 weeks, 100x objective                                           8 weeks, 100x objective
                                       0.05



                                      0.045



                                       0.04



                                      0.035
                                                                          8-week fouling
                                       0.03
                                                                          cell shows the
                   absorbance units




                                      0.025



                                       0.02                               beginning of
                                      0.015



                                       0.01
                                                                          biofilm
                                      0.005



                                         0
                                                                          exopolymer        22
                                              A   B   C   D   E
Brewery Aging Line




2 weeks, 100x objective                                        8 weeks, 100x objective
                                        0.05



                                       0.045



                                        0.04



                                       0.035
                                                                        Fouling cells
                                        0.03

                                                                        show aging line
                    absorbance units




                                       0.025



                                        0.02
                                                                        cleaning
                                       0.015



                                        0.01                            requires more
                                                                        water velocity
                                       0.005



                                          0
                                               A   B   C   D   E
                                                                                          23
Brewery Filler Inlet Line




2 weeks, 100x objective                                        8 weeks, 100x objective
                                        0.05



                                       0.045



                                        0.04



                                       0.035
                                                                       Fouling cells
                                        0.03
                                                                       determine onset of
                    absorbance units




                                       0.025



                                        0.02                           biofouling in bottling
                                       0.015



                                        0.01
                                                                       line
                                       0.005



                                          0
                                               A   B   C   D    E
                                                                                            24
Brewery Filler Inlet Line




8 weeks, 100x objective   8 weeks, 100x objective




                                                    25
Case Study: Winery Bottling Line 1
            After CIP




   1-week exposure, 100x                     4-week exposure, 100x

                  Bottling line 1 appears very clean

                                                                     26
Winery Bottling Line 2 After CIP




 1-week exposure, 100x                  4-week exposure, 100x

   Bottling line 2 appears to have some particle contamination

                                                                 27
Winery Bottling Line 2 Before & After CIP



                                                           Removed by CIP


                                          Not Removed
                                          by CIP




      After water flush                              After CIP

Fouling cell technology detects that the winery CIP removes one fouling
 component but not the others from the stainless steel process surface
                                                                          28
Case Study: Biotech Company
              Fermentation
                       2-day exposure
                       before CIP


                                        2-day exposure after
                                        CIP




Fouling cell
technology
reveals CIP-        4-week exposure
resistant biofilm   after CIP
at 4 weeks
                                                               29
Biotech Company Recovery
                       2-day exposure
                       before CIP


                                        2-day exposure after
                                        CIP




Fouling cell
technology
reveals CIP-        4-week exposure
resistant biofilm   after CIP
at 4 weeks
                                                               30
Conclusions
• In-line fouling cells can provide:
   – An early warning for issues of process cleanliness
     and health
   – Information on chemistry and rate of biofouling within
     system
   – Objective data on CIP efficacy
   – Ability to determine efficacy of proposed cleaning
     changes in the lab, not in production
   – Ability to screen new products for fouling propensity
• These methods are complimentary to existing
  process health measures

                                                          31

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Direct Detection of Biofilms Using Fouling Cell Analysis

  • 1. Direct Detection of Biofilms Mark Fornalik Ethox International 1
  • 2. What is Biofouling? • Biofouling* is the unwanted adhesion of bacteria or other organisms onto surfaces of solution-handling systems • Biofouling is not necessarily uniform in space & time • Biofouling may contain significant amounts of inorganic materials held together by the polymeric matrix *(Charackis & Marshall, Biofilms, 1990) Biofouling can be extraordinarily difficult to detect 2 and control
  • 3. What Problems Does Biofouling Cause? • Off taste in food & beverage products • Product spoilage • Extended downtimes to clean the process • More aggressive process cleaning methods • Random microbiology problems 3
  • 4. Current Biofilm Detection Methods • Product sampling: – Taste (for food & beverage products) – Microbiological plating • Process sampling: – Microbiological plating of water rinse effluent – Microbiological plating of process swab samples – ATP or PCR analysis of swab samples All of these methods require organisms to grow in 4 culture in the microbiology lab
  • 5. Problems with Current Biofilm Test Methods • Biofilms can be remarkably difficult to find and sample in large-scale manufacturing processes (i.e., pipes and tanks) • Even if recovered, biofilms tend not to grow in culture in the microbiology lab • Culturing techniques, if they work, only indicate whether an organism is dead, not if the organism is dormant or even if the dead organism has been removed from the process • Dead organisms on a process surface serve as a nutrient source for the wave of microorganisms • Biofilms will sacrifice the outermost layer of organisms to cleaning chemicals but protect the hidden, innermost layer of organisms from CIP methods • High-tech methods of ATP and PCR analysis require a minimum number of cells in order to generate a signal; very few cells are necessary to generate an abundance of biofilm exopolymer (“glue”) and biofilms can evade detection by ATP and PCR methods 5
  • 6. Biofilm Locations • Biofilms can be found in: – Water systems – Food & beverage plant product lines – Dairy processing plants – Pharmaceutical manufacturing processes – Cosmetics and nutraceuticals plants – Raw materials suppliers’ processes – Cleaning chemicals – Steam lines – Fine & specialty chemicals plants – Pulp & paper mills – Heat exchangers 6
  • 7. Biofilm-Related Contaminants • Cells (possibly pathogenic) • Anions (acetate, formate, nitrate, etc.) • Proteins, glycoproteins, carbohydrates, fatty acids • Enzymes • Surfactants • Organic and inorganic particles • Substrate degradation (metal & plastics corrosion) 7
  • 8. Biofouling Rate Physical quality of product fouling mass physical degrades Chemical chemical quality of secondary fouling product degrades induction period time The goal of cleaning is to return the system to the induction period level of fouling 8
  • 9. Fouling Cell Techology • Does not depend on microbial culturing techniques to detect biofilms • Biofilms are not removed from their surface but instead analyzed while still in place on the colonized surface • Fouling cell analysis by reflection infrared spectroscopy detects primarily the biofilm exopolymer, not the organisms, and as a result detects the very earliest stages of biofilm formation 9
  • 10. Fouling Cell: Sanitary Cross with Polished End Caps Insoluble material deposits on pipe wall and mirror-polished end Mirror-polished cap during product flow end caps Product Flow Biofouling that adsorbs on pipe wall also adsorbs on mirror-polished end caps (fouling cell discs) 10
  • 11. Measuring Wall Fouling Fourier transform infrared beam Spectrum from reflected infrared beam Fouled end cap (fouling cell disc) 11
  • 12. Fouling Identification FTIR provides a “chemical fingerprint” of the biofilm, as well as an indication of biofilm amount 12
  • 13. Fouling Cell Analysis Tracks Biofilm Chemistry Changes Over Time 0.020 *Subtraction Result:ir1848, 610 NRX disc #26, 3-month exposure, no clean *Subtraction Result:ir1896, 610 NRX, 14 batches (4 days), disc #7 (1/30 - 2/2/98) 0.019 *Subtraction Result:ir2288, 610, NRX, #10, 24 hours, 5 batches, 2/26 - 2/27/98 *Subtraction Result:ir1974, disc 10, 610 NRX, 1 batch, 4 hrs, without santoprene gasket 0.018 0.017 0.016 0.015 0.014 0.013 0.012 0.011 0.010 0.009 0.008 0.007 Absorbance 0.006 0.005 0.004 0.003 6 mo 0.002 0.001 0.000 -0.001 24 hrs -0.002 -0.003 -0.004 8 hrs -0.005 -0.006 -0.007 2 hrs -0.008 4000 3800 3600 3400 3200 3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800 600 Wavenumbers (cm-1) Biofilm chemistry changes to cleaning-resistant exopolymer upon aging 13
  • 14. Fouling Cell Analysis Tracks Impact of Improved Mechanical Cleaning on Biofilm 0.0080 0.0075 0.0070 0.0065 0.0060 Old water flush 0.0055 0.0050 0.0045 Absorbance 0.0040 0.0035 Improved water 0.0030 0.0025 flush 0.0020 0.0015 0.0010 0.0005 0.0000 -0.0005 -0.0010 3500 3000 2500 2000 1500 1000 Wavenumbers (cm-1) Peak height data correlate to effectiveness of cleaning: the smaller the peak, the more effective the cleaning 14
  • 15. Biofilm Resistance to Cleaning • Standard CIP methods may not remove biofilm • Biofilms able to grow after 8 months desiccation • Biofilms withstood 80C or higher water temperatures • Biofilms withstood 20, 50 and 200 ppm chlorine, 25 ppm iodine ∗ Food Protection Report, 7(5):8 (1991) 15
  • 16. Bacteria Populations in a Pipe TRADITIONAL SAMPLING: 1% of total bacteria population inside of pipe is planktonic (free swimming organisms from bulk solution) FOULING CELL SAMPLING: 99% of total bacteria population inside of pipe is sessile (attached biofilm on the wall of the pipe) Sessile organisms (biofilms) can be very resistant to cleaning 16
  • 17. 45° Ultrapure Water Biofouling C 1 day 2 days 17 4 days 9 days
  • 18. Biofilm Resistance to Cleaning: Bleach Treatment Biofilm remaining after bleach treatment 18
  • 19. Fouling Cell Analysis Directly Measures Impact of Chemical Cleaning Parameters Impact of temperature 100% 90% cleaning efficiency 80% 70% 60% 50% 40% 30% 20% Impact of concentration 10% 0% 100% 25 C 45 C 65 C 90% cleaning efficiency 5% NaOH 80% 70% 60% The higher the bars, 50% 40% the more efficient the 30% 20% cleaning 10% 0% 0.2% 1.0% 5.0% NaOH wt% @ 60 C 19
  • 20. Case Study: Mapping Process CIP Efficacy in a Brewery FTIR spectra of fouling cells placed in 5 locations of a brewery process (stages A through E) for 8 weeks FTIR & epifluorescence of fouling cells can provide cleaning efficacy data from end to end of a process 20
  • 21. Process Mapping in a Brewery: FTIR Peak Heights by Location 0.05 0.045 0.04 0.035 0.03 absorbance units 0.025 0.02 0.015 0.01 0.005 0 A B C D E Process Start Packaging 21
  • 22. Brewery Wort Line 2 weeks, 100x objective 8 weeks, 100x objective 0.05 0.045 0.04 0.035 8-week fouling 0.03 cell shows the absorbance units 0.025 0.02 beginning of 0.015 0.01 biofilm 0.005 0 exopolymer 22 A B C D E
  • 23. Brewery Aging Line 2 weeks, 100x objective 8 weeks, 100x objective 0.05 0.045 0.04 0.035 Fouling cells 0.03 show aging line absorbance units 0.025 0.02 cleaning 0.015 0.01 requires more water velocity 0.005 0 A B C D E 23
  • 24. Brewery Filler Inlet Line 2 weeks, 100x objective 8 weeks, 100x objective 0.05 0.045 0.04 0.035 Fouling cells 0.03 determine onset of absorbance units 0.025 0.02 biofouling in bottling 0.015 0.01 line 0.005 0 A B C D E 24
  • 25. Brewery Filler Inlet Line 8 weeks, 100x objective 8 weeks, 100x objective 25
  • 26. Case Study: Winery Bottling Line 1 After CIP 1-week exposure, 100x 4-week exposure, 100x Bottling line 1 appears very clean 26
  • 27. Winery Bottling Line 2 After CIP 1-week exposure, 100x 4-week exposure, 100x Bottling line 2 appears to have some particle contamination 27
  • 28. Winery Bottling Line 2 Before & After CIP Removed by CIP Not Removed by CIP After water flush After CIP Fouling cell technology detects that the winery CIP removes one fouling component but not the others from the stainless steel process surface 28
  • 29. Case Study: Biotech Company Fermentation 2-day exposure before CIP 2-day exposure after CIP Fouling cell technology reveals CIP- 4-week exposure resistant biofilm after CIP at 4 weeks 29
  • 30. Biotech Company Recovery 2-day exposure before CIP 2-day exposure after CIP Fouling cell technology reveals CIP- 4-week exposure resistant biofilm after CIP at 4 weeks 30
  • 31. Conclusions • In-line fouling cells can provide: – An early warning for issues of process cleanliness and health – Information on chemistry and rate of biofouling within system – Objective data on CIP efficacy – Ability to determine efficacy of proposed cleaning changes in the lab, not in production – Ability to screen new products for fouling propensity • These methods are complimentary to existing process health measures 31