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Analysis of metagenomes
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Lars Juhl Jensen
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Max Planck Institute for Marine Microbiology, Bremen, Germany, August 24-25, 2007
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Analysis of metagenomes
1.
Analysis of metagenomes
Lars Juhl Jensen EMBL Heidelberg
2.
the challenge
3.
the sheer amount
of data
4.
5.
what can we
do with it?
6.
function prediction
7.
sequence homology
8.
gene neighborhood
9.
10.
exploitation
11.
bioremediation
12.
13.
statistical analyses
14.
comparing environments
15.
Underground Mine Biofilm
Surface Sea Water Farm Soil Deep Sea Whale Skeleton
16.
GC content
17.
18.
effective genome size
19.
20.
phylogenetic composition
21.
22.
functional fingerprints
23.
24.
visualization
25.
26.
metabolic reactions
27.
28.
saltmats are like
onions …
29.
… they
have layers
30.
31.
32.
Download now