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Open Topology: A Toolkit for Brain Isosurface Correction Sylvain JAUME (1) , Patrice RONDAO (2) , Benoit MACQ (2) (1)  Kitware Inc.,  (2)  University of Louvain
Visualization of the Brain ,[object Object],[object Object]
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh with  Handles
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh with  Handles
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh with  Handles
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh with  Handles
Visualization of the Brain 3D Image Segmentation Marching Cubes Smoothing Mesh with  Handles
Visualization of the Brain ,[object Object],[object Object],[object Object],[object Object]
Visualization of the Brain ,[object Object],[object Object],[object Object],[object Object]
State of the Art ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Contributions ,[object Object],[object Object],[object Object]
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Corrected 3D Image Contours
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Polylines Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Marching Cubes Corrected Mesh Corrected 3D Image
Algorithm Overview Marching Cubes Handle Detection Handle Correction 3D Image Triangle Mesh Contours Marching Cubes Corrected Mesh Corrected 3D Image
Key Points 1. Embracing the Handle 2. Holding it Tight 3. Filling the Handle
1. Embracing the Handle
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
1. Embracing the Handle ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
2. Holding it Tight ,[object Object]
3. Filling the Handle  ,[object Object]
Putting it Together ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Performance ,[object Object],[object Object],[object Object],[object Object],[object Object],Euler Characteristic
Data Structures vtkCellLinks vtkCellArray vtkPoints
Data Structures ,[object Object],[object Object],[object Object],Half-Edge vtkCellArray vtkPoints
Data Structures ,[object Object],[object Object],Detection Localization Half-Edge vtkCellArray vtkPoints
Data Structures ,[object Object],[object Object],Detection Localization Half-Edge vtkCellArray vtkPoints
Data Structures ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Code ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Goal ,[object Object]
Perspectives ,[object Object],[object Object],[object Object],[object Object]
MICCAI Open Source Workshop ,[object Object],[object Object],[object Object],[object Object],[object Object]
www.OpenTopology.org ,[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object]
References I ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
References II ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
References III ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
State of the Art ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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