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the reality of
                          ‘digital science’

                            kaitlin thaney
                            SciPy, 13 july 2011
                               austin, texas


Wednesday, 13 July 2011
xi. background




Wednesday, 13 July 2011
about me



Wednesday, 13 July 2011
Digital Science
                          (the company)



Wednesday, 13 July 2011
investment arm
                           incubator role
                            in-house dev


Wednesday, 13 July 2011
tiered approach
                              build to scale
                          researcher-focused


Wednesday, 13 July 2011
1. science, tech, and
                        moving online



Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
research
                                        idea
                                                    lit review
                          publish
                                                      discovery

    share results                                    materials

                                        retest
                           analyze                  experiment

                                     collect data
Wednesday, 13 July 2011
blocking points
                                    (to name a few ... )
                                           idea
                                                      lit review
                          publish
                                                        discovery

    share results                                       materials

                                           retest
                           analyze                    experiment

                                       collect data
Wednesday, 13 July 2011
access



                          analysis




                              dissemination
Wednesday, 13 July 2011
text text
                             text




Wednesday, 13 July 2011
discovery &
                            delivery


Wednesday, 13 July 2011
changes at the
                            workbench


Wednesday, 13 July 2011
annotation &
                            curation


Wednesday, 13 July 2011
social &
                          administrative


Wednesday, 13 July 2011
gaps still exist




Wednesday, 13 July 2011
2. key constituencies



Wednesday, 13 July 2011
(3)

Wednesday, 13 July 2011
machines
                            researchers
                          decision makers


Wednesday, 13 July 2011
machines
                            researchers
                          decision makers


Wednesday, 13 July 2011
...
                          annotation
                            markup
                            search
                           discovery
                          “behind the
                            scenes”
                               ...


Wednesday, 13 July 2011
[brief interlude]



Wednesday, 13 July 2011
digitisation of the
                           scholarly canon
                              (content is still king)




Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
not nearly there yet ...




Wednesday, 13 July 2011
Wednesday, 13 July 2011
barriers to “access”




Wednesday, 13 July 2011
still the starting point




Wednesday, 13 July 2011
patents are no better
                           (in many cases, worse)




Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
can streamline




Wednesday, 13 July 2011
name disambiguation




Wednesday, 13 July 2011
10,11-dihydro-5-methyl-5H-dibenzo[b,e][1,4]diazepin-11-one

                          (still strains the minds of the best)




Wednesday, 13 July 2011
machine readability
       is key.

               agreement is
                  hard.



Wednesday, 13 July 2011
10,11-dihydro-5-methyl-5H-dibenzo[b,e][1,4]diazepin-11-one




Wednesday, 13 July 2011
“everything is metadata ...
                          everything can be a label.”
                                    - david weinberger




Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
machines
                            researchers
                          decision makers


Wednesday, 13 July 2011
a few edge cases
                              (though no field is
                                        perfect)



Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
CC-BY-2.0 - Plaxco Lab - http://www.flickr.com/photos/34857812@N04/



Wednesday, 13 July 2011
Wednesday, 13 July 2011
tracking
                          expiration
                          calibration


Wednesday, 13 July 2011
ordering
                                       +
                                  processing

                          the non-digital



Wednesday, 13 July 2011
protocols
                          parameters
                          calibration
                           misc. lit



Wednesday, 13 July 2011
managing information
                          different types of “data”




Wednesday, 13 July 2011
often gigabytes,
                           not terabytes



Wednesday, 13 July 2011
“i invented a folder based
                         system ...”




Wednesday, 13 July 2011
“i invented a folder based
                         system ...”


       “yeah, we had a LIMS. it only
       ever got used to store photos
           from lab nights out.”

Wednesday, 13 July 2011
Wednesday, 13 July 2011
why?
                   experimentation reliance

                          data moves, grows legs

                    funder/instit’n pressure


Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
machines
                            researchers
                          decision makers


Wednesday, 13 July 2011
rewards, incentives
                             the “ why ”




Wednesday, 13 July 2011
data capture
                          (of a different sort)




Wednesday, 13 July 2011
the “social issue”
                            best practices
                        behaviour roadblocks
                   discipline / researcher specific




Wednesday, 13 July 2011
paper’s still the currency




Wednesday, 13 July 2011
imperfect system




Wednesday, 13 July 2011
“Right now we're going through a
              Cambrian explosion of metrics.”
                                    - Johan Bollen




                               Nature 465, 864-866 (2010) | doi:10.1038/465864a




Wednesday, 13 July 2011
there’s been a drastic spike in terms of
                           sheer volume and type



Wednesday, 13 July 2011
citation / impact factor
                                        h - index
                          weighted citations (eigenfactor, sjr)
                               “betweenness centrality”
                                    alt-metrics, etc.

Wednesday, 13 July 2011
difficult to ...
                         harmonise
                   track /maintain / map
                         understand
                     (even still measure)


Wednesday, 13 July 2011
administrators / funders
                            =
               part of the research cycle



Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
Wednesday, 13 July 2011
3. the reality



Wednesday, 13 July 2011
“the future is here ...
             just not evenly
                distributed yet.”
                          - William Gibson



Wednesday, 13 July 2011
changing
                          understandings,
                            paradigms


Wednesday, 13 July 2011
technology can help
            design decisions are key
             plan for the irrational


Wednesday, 13 July 2011
more efficient research
             increase productivity
             enable reproducibility


Wednesday, 13 July 2011
thank you.

                 k.thaney@digital-science.com
                    www.digital-science.com
                         @kaythaney


Wednesday, 13 July 2011

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"The Reality of Digital Science"