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A WHALE OF A TALE - A  DNA DETECTIVE STORY Dr Karobi Moitra , NCI Frederick
Where do whales stand on the tree of life? Kingdom: Animalia Phylum: Chordata Sub phylum: Vertebrata Class: Mammalia Order: Cetacea (Gk Cetus) Suborder: Odontoceti Toothed whales Eg:Killer whale Suborder: Mysticeti Baleen whales Eg:Blue whale
Baleen Used for filter feeding  Made of keratin
Some species of whale are endangered ! How did these whales become endangered?
Why were whales hunted? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
How do we stop hunting of endangered species? CITES : Convention on International Trade in Endangered Species Of Wild Flora and Fauna Formed in 1973 and came into force in 1975 it works by controlling international trade in endangered species and  Forbids/restricts any trade in selected species including the following species of whale: fin whales, sei whales, humpback whales, Brydes whales,blue whales, Asian gray  whale and certain populations of Minke whales.
Whales ahoy! FIN WHALE BLUE WHALE BRYDES WHALE
Detective work - elementary my dear Watson! Scott Baker came up with a plan and enlisted the help of Naoko Funahashi a Japanese conservationist For a long time Greenpeace and Earthtrust had suspicions the whale meat (kujira)sold in Japanese markets was from  endangered species but how to prove it? What do you think the plan was?
Problems: ,[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object]
The double helix
2. None of the whale meat can be taken out of Japan to Scotts lab at NCI Frederick Need to copy the whale DNA How would you do that?
PCR Copying DNA Starting DNA Template 5’ 5’ 3’ 3’
The Polymerase Chain Reaction   ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
3’ 5’ 5’ 3’ 5’ 3’ 3’ 5’ Denaturation 94 degrees centigrade
Taq 5’ 3’ 3’ 5’ 3’ 3’ 5’ 3’ 5’ 3’ primer 5’ 3’ 5’ Annealing ACGC TGAT T A 55 degrees 72 degrees Extension To copy a specific sequence
Amplification/Extension 72 degrees C O P I E S ~ 25 cycles
DNA Gel Electrophoresis
The Plan : Naoko went to the markets & stuffed whale meat into little glass vials labeled with the name and the market location Scott made an improvised genetics lab in his Tokyo hotel room and copied the DNA from the whale meat using PCR He then took the DNA ran it on a gel and took only the copied DNA with him leaving the originals or ‘templates’ behind.
Fin whales Sei whales Humpback whales Brydes whales Blue whales Asian gray whale  Minke whales. X Species (DNA sequence) ATTTTAGGGGTACC  etc. ATTTTAGGGGTACC
The Results Sequencing of the DNA revealed that a no. of endangered species of whale including  fin whales, sei whales, humpbacks Brydes whales , blue whales and minke whales  were being  Illegally hunted  Scott convinced the Japanese government to monitor their catch of whales using modern molecular biology methods  to make sure that endangered species were not being  hunted
SAVE THE WHALES!
References / Websites www.animalcorner.co.uk www.wikipedia.org www.enchantedlearning.org www.acsonline.org (American cetacean society) Tears of the Cheetah by Stephen J . O’Brien
We coexist on a planet with whales who have a brain not only much larger, but far more complex and far older  than ours. And we don’t have a clue what it is used for Roger Payne

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Karobi Moitra 4 H Class Whale Of A Tale

  • 1. A WHALE OF A TALE - A DNA DETECTIVE STORY Dr Karobi Moitra , NCI Frederick
  • 2. Where do whales stand on the tree of life? Kingdom: Animalia Phylum: Chordata Sub phylum: Vertebrata Class: Mammalia Order: Cetacea (Gk Cetus) Suborder: Odontoceti Toothed whales Eg:Killer whale Suborder: Mysticeti Baleen whales Eg:Blue whale
  • 3. Baleen Used for filter feeding Made of keratin
  • 4. Some species of whale are endangered ! How did these whales become endangered?
  • 5.
  • 6. How do we stop hunting of endangered species? CITES : Convention on International Trade in Endangered Species Of Wild Flora and Fauna Formed in 1973 and came into force in 1975 it works by controlling international trade in endangered species and Forbids/restricts any trade in selected species including the following species of whale: fin whales, sei whales, humpback whales, Brydes whales,blue whales, Asian gray whale and certain populations of Minke whales.
  • 7. Whales ahoy! FIN WHALE BLUE WHALE BRYDES WHALE
  • 8. Detective work - elementary my dear Watson! Scott Baker came up with a plan and enlisted the help of Naoko Funahashi a Japanese conservationist For a long time Greenpeace and Earthtrust had suspicions the whale meat (kujira)sold in Japanese markets was from endangered species but how to prove it? What do you think the plan was?
  • 9.
  • 10.
  • 12. 2. None of the whale meat can be taken out of Japan to Scotts lab at NCI Frederick Need to copy the whale DNA How would you do that?
  • 13. PCR Copying DNA Starting DNA Template 5’ 5’ 3’ 3’
  • 14.
  • 15. 3’ 5’ 5’ 3’ 5’ 3’ 3’ 5’ Denaturation 94 degrees centigrade
  • 16. Taq 5’ 3’ 3’ 5’ 3’ 3’ 5’ 3’ 5’ 3’ primer 5’ 3’ 5’ Annealing ACGC TGAT T A 55 degrees 72 degrees Extension To copy a specific sequence
  • 17. Amplification/Extension 72 degrees C O P I E S ~ 25 cycles
  • 19. The Plan : Naoko went to the markets & stuffed whale meat into little glass vials labeled with the name and the market location Scott made an improvised genetics lab in his Tokyo hotel room and copied the DNA from the whale meat using PCR He then took the DNA ran it on a gel and took only the copied DNA with him leaving the originals or ‘templates’ behind.
  • 20. Fin whales Sei whales Humpback whales Brydes whales Blue whales Asian gray whale Minke whales. X Species (DNA sequence) ATTTTAGGGGTACC etc. ATTTTAGGGGTACC
  • 21. The Results Sequencing of the DNA revealed that a no. of endangered species of whale including fin whales, sei whales, humpbacks Brydes whales , blue whales and minke whales were being Illegally hunted Scott convinced the Japanese government to monitor their catch of whales using modern molecular biology methods to make sure that endangered species were not being hunted
  • 23. References / Websites www.animalcorner.co.uk www.wikipedia.org www.enchantedlearning.org www.acsonline.org (American cetacean society) Tears of the Cheetah by Stephen J . O’Brien
  • 24. We coexist on a planet with whales who have a brain not only much larger, but far more complex and far older than ours. And we don’t have a clue what it is used for Roger Payne