SlideShare a Scribd company logo

BITS: Introduction to Linux - Software installation the graphical and the command-line way

•Download as PPT, PDF•
•
BITS
BITS

This slide is part of the BITS training session: "Introduction to linux for life sciences." See http://www.bits.vib.be/index.php?option=com_content&view=article&id=17203890%3Abioperl-additional-material&catid=84&Itemid=284

EducationTechnology
1 of 68
Dive into Linux ,[object Object],[object Object],BITS/VIB Bioinformatics Training – Oct 3, 2011 – Version 2 Joachim Jacob < [email_address] >; version 1 Luc Ducazu <luc@daphnia.com>
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object]
Software for Linux ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software ,[object Object],[object Object],[object Object],[object Object],[object Object]
Software installation the graphical way ,[object Object]
Software installation
Software installation
Software installation
Dependencies ,[object Object],[object Object],[object Object]
Software installation
Multi-user aspects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Software installation
Software installation
Test run press <win+space> and start typing “Fir”
Where to find software? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Important: 32 bit vs. 64 bit
Where does the software manager finds its packages? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Enabling repositories
Enabling repositories
Exercise ,[object Object],[object Object],Choose 32 bit
Solution ,[object Object],preferred
Solution
Solution
Fastx is a command-line tool So we will dive into the shell!
First and foremost...
Shell ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
You never walk alone ,[object Object],[object Object],[object Object]
Man ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Exercise ,[object Object],[object Object],[object Object],[object Object]
Some solution ,[object Object],[object Object],[object Object],[object Object],apropos calendar cal (1) - displays a calendar and the date of Easter calendar (1) - reminder service Date::Calc (3pm) - Gregorian calendar date calculations Date::Calendar (3pm) - Calendar objects for different holiday schemes Date::Calendar::Profiles (3pm) - Some sample profiles for Date::Calendar and Date::Calendar::Year Date::Calendar::Year (3pm) - Implements embedded &quot;year&quot; objects for Date::Calendar Ncal (1) - displays a calendar and the date of Easter
Getting formal about commands ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Commands ,[object Object],[object Object],[object Object],[object Object]
Commands ,[object Object],[object Object],[object Object],[object Object],[object Object]
Short options ,[object Object],[object Object],[object Object]
Long options ,[object Object],[object Object]
Arguments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Arguments ,[object Object],[object Object]
More about ls ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Long List ,[object Object],[object Object],[object Object],[object Object]
Permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
File permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Executable files ,[object Object],[object Object],[object Object]
Executable files ,[object Object]
Directory permissions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Wildcards ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Hidden files ,[object Object],[object Object]
Exercises ,[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Command history ,[object Object],[object Object],[object Object]
Command history ,[object Object],[object Object]
Tab expansion ,[object Object],[object Object],[object Object],[object Object],[object Object]
Switch User ,[object Object],[object Object],[object Object],[object Object]
Switch User ,[object Object],[object Object]
Switch User ,[object Object],[object Object],[object Object]
Switch User ,[object Object]
Yum ,[object Object],[object Object],[object Object],[object Object],[object Object]
Yum repositories ,[object Object],[object Object]
Yum repositories ,[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object],[object Object]
Yum - examples ,[object Object],[object Object],[object Object]
Exercise ,[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Solutions ,[object Object],[object Object],[object Object],[object Object]
Solution ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Linux ,[object Object]

Recommended

Unix command line concepts
Unix command line conceptsUnix command line concepts
Unix command line conceptsArtem Nagornyi
 
Productivity tips - Introduction to linux for bioinformatics
Productivity tips - Introduction to linux for bioinformaticsProductivity tips - Introduction to linux for bioinformatics
Productivity tips - Introduction to linux for bioinformaticsBITS
 
Introduction to UNIX Command-Lines with examples
Introduction to UNIX Command-Lines with examplesIntroduction to UNIX Command-Lines with examples
Introduction to UNIX Command-Lines with examplesNoé Fernández-Pozo
 
Text mining on the command line - Introduction to linux for bioinformatics
Text mining on the command line - Introduction to linux for bioinformaticsText mining on the command line - Introduction to linux for bioinformatics
Text mining on the command line - Introduction to linux for bioinformaticsBITS
 
101 4.1 create partitions and filesystems
101 4.1 create partitions and filesystems101 4.1 create partitions and filesystems
101 4.1 create partitions and filesystemsAcácio Oliveira
 
Know the UNIX Commands
Know the UNIX CommandsKnow the UNIX Commands
Know the UNIX CommandsBrahma Killampalli
 
101 3.3 perform basic file management
101 3.3 perform basic file management101 3.3 perform basic file management
101 3.3 perform basic file managementAcácio Oliveira
 
Os lab manual
Os lab manualOs lab manual
Os lab manualNeelamani Samal
 

Recommended

Unix command line concepts
Unix command line conceptsUnix command line concepts
Unix command line conceptsArtem Nagornyi
 
Productivity tips - Introduction to linux for bioinformatics
Productivity tips - Introduction to linux for bioinformaticsProductivity tips - Introduction to linux for bioinformatics
Productivity tips - Introduction to linux for bioinformaticsBITS
 
Introduction to UNIX Command-Lines with examples
Introduction to UNIX Command-Lines with examplesIntroduction to UNIX Command-Lines with examples
Introduction to UNIX Command-Lines with examplesNoé Fernández-Pozo
 
Text mining on the command line - Introduction to linux for bioinformatics
Text mining on the command line - Introduction to linux for bioinformaticsText mining on the command line - Introduction to linux for bioinformatics
Text mining on the command line - Introduction to linux for bioinformaticsBITS
 
101 4.1 create partitions and filesystems
101 4.1 create partitions and filesystems101 4.1 create partitions and filesystems
101 4.1 create partitions and filesystemsAcácio Oliveira
 
Know the UNIX Commands
Know the UNIX CommandsKnow the UNIX Commands
Know the UNIX CommandsBrahma Killampalli
 
101 3.3 perform basic file management
101 3.3 perform basic file management101 3.3 perform basic file management
101 3.3 perform basic file managementAcácio Oliveira
 
Os lab manual
Os lab manualOs lab manual
Os lab manualNeelamani Samal
 
101 2.1 design hard disk layout
101 2.1 design hard disk layout101 2.1 design hard disk layout
101 2.1 design hard disk layoutAcácio Oliveira
 
101 2.4 use debian package management
101 2.4 use debian package management101 2.4 use debian package management
101 2.4 use debian package managementAcácio Oliveira
 
Unix practical file
Unix practical fileUnix practical file
Unix practical fileSoumya Behera
 
Bozorgmeh os lab
Bozorgmeh os labBozorgmeh os lab
Bozorgmeh os labFS Karimi
 
The structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformaticsThe structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformaticsBITS
 
Part 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tipsPart 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tipsJoachim Jacob
 
Unix(introduction)
Unix(introduction)Unix(introduction)
Unix(introduction)meashi
 
Piping into-php
Piping into-phpPiping into-php
Piping into-phpShaun Morrow
 
SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1solgenomics
 
Managing your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformaticsManaging your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformaticsBITS
 
Basic linux commands
Basic linux commandsBasic linux commands
Basic linux commandsShakeel Shafiq
 
Unix Command Line Productivity Tips
Unix Command Line Productivity TipsUnix Command Line Productivity Tips
Unix Command Line Productivity TipsKeith Bennett
 
Linux commands
Linux commandsLinux commands
Linux commandsManish Bothra
 
Basic linux commands
Basic linux commandsBasic linux commands
Basic linux commandsHarikrishnan Ramakrishnan
 
Linux class 8 tar
Linux class 8 tar Linux class 8 tar
Linux class 8 tar Khawar Nehal khawar.nehal@atrc.net.pk
 
Basic Unix
Basic UnixBasic Unix
Basic UnixRajesh Kumar
 
Linux commands
Linux commandsLinux commands
Linux commandspenetration Tester
 
Unix slideshare
Unix slideshareUnix slideshare
Unix slideshareMohan Krishna Kona
 
Linux powerpoint
Linux powerpointLinux powerpoint
Linux powerpointbijanshr
 
Linux
LinuxLinux
Linuxsravan kumar
 
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utvecklingLokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utvecklingJonas Lagander
 
Genevestigator
GenevestigatorGenevestigator
GenevestigatorBITS
 

More Related Content

What's hot

101 2.1 design hard disk layout
101 2.1 design hard disk layout101 2.1 design hard disk layout
101 2.1 design hard disk layoutAcácio Oliveira
 
101 2.4 use debian package management
101 2.4 use debian package management101 2.4 use debian package management
101 2.4 use debian package managementAcácio Oliveira
 
Bozorgmeh os lab
Bozorgmeh os labBozorgmeh os lab
Bozorgmeh os labFS Karimi
 
The structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformaticsThe structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformaticsBITS
 
Part 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tipsPart 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tipsJoachim Jacob
 
Unix(introduction)
Unix(introduction)Unix(introduction)
Unix(introduction)meashi
 
SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1solgenomics
 
Managing your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformaticsManaging your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformaticsBITS
 
Unix Command Line Productivity Tips
Unix Command Line Productivity TipsUnix Command Line Productivity Tips
Unix Command Line Productivity TipsKeith Bennett
 
Linux powerpoint
Linux powerpointLinux powerpoint
Linux powerpointbijanshr
 

What's hot (20)

101 2.1 design hard disk layout
101 2.1 design hard disk layout101 2.1 design hard disk layout
101 2.1 design hard disk layout
 
101 2.4 use debian package management
101 2.4 use debian package management101 2.4 use debian package management
101 2.4 use debian package management
 
Unix practical file
Unix practical fileUnix practical file
Unix practical file
 
Bozorgmeh os lab
Bozorgmeh os labBozorgmeh os lab
Bozorgmeh os lab
 
The structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformaticsThe structure of Linux - Introduction to Linux for bioinformatics
The structure of Linux - Introduction to Linux for bioinformatics
 
Part 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tipsPart 6 of "Introduction to linux for bioinformatics": Productivity tips
Part 6 of "Introduction to linux for bioinformatics": Productivity tips
 
Unix(introduction)
Unix(introduction)Unix(introduction)
Unix(introduction)
 
Piping into-php
Piping into-phpPiping into-php
Piping into-php
 
SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1SGN Introduction to UNIX Command-line 2015 part 1
SGN Introduction to UNIX Command-line 2015 part 1
 
Managing your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformaticsManaging your data - Introduction to Linux for bioinformatics
Managing your data - Introduction to Linux for bioinformatics
 
Basic linux commands
Basic linux commandsBasic linux commands
Basic linux commands
 
Unix Command Line Productivity Tips
Unix Command Line Productivity TipsUnix Command Line Productivity Tips
Unix Command Line Productivity Tips
 
Linux commands
Linux commandsLinux commands
Linux commands
 
Basic linux commands
Basic linux commandsBasic linux commands
Basic linux commands
 
Linux class 8 tar
Linux class 8 tar Linux class 8 tar
Linux class 8 tar
 
Basic Unix
Basic UnixBasic Unix
Basic Unix
 
Linux commands
Linux commandsLinux commands
Linux commands
 
Unix slideshare
Unix slideshareUnix slideshare
Unix slideshare
 
Linux powerpoint
Linux powerpointLinux powerpoint
Linux powerpoint
 
Linux
LinuxLinux
Linux
 

Viewers also liked

Lokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utvecklingLokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utvecklingJonas Lagander
 
Genevestigator
GenevestigatorGenevestigator
GenevestigatorBITS
 
Projekt sociala ekonomin i motala - slutrapport 2015
Projekt sociala ekonomin i motala - slutrapport 2015Projekt sociala ekonomin i motala - slutrapport 2015
Projekt sociala ekonomin i motala - slutrapport 2015Jonas Lagander
 
Besök kimstad rapport förstudie
Besök kimstad rapport förstudieBesök kimstad rapport förstudie
Besök kimstad rapport förstudieJonas Lagander
 
BITS training - UCSC Genome Browser - Part 2
BITS training - UCSC Genome Browser - Part 2BITS training - UCSC Genome Browser - Part 2
BITS training - UCSC Genome Browser - Part 2BITS
 
Vnti11 basics course
Vnti11 basics courseVnti11 basics course
Vnti11 basics courseBITS
 
BITS - Introduction to comparative genomics
BITS - Introduction to comparative genomicsBITS - Introduction to comparative genomics
BITS - Introduction to comparative genomicsBITS
 
BITS: UCSC genome browser - Part 1
BITS: UCSC genome browser - Part 1BITS: UCSC genome browser - Part 1
BITS: UCSC genome browser - Part 1BITS
 
RNA-seq: Mapping and quality control - part 3
RNA-seq: Mapping and quality control - part 3RNA-seq: Mapping and quality control - part 3
RNA-seq: Mapping and quality control - part 3BITS
 
BITS: Introduction to linux, distributions and installation
BITS: Introduction to linux, distributions and installationBITS: Introduction to linux, distributions and installation
BITS: Introduction to linux, distributions and installationBITS
 
BITS: Basics of sequence analysis
BITS: Basics of sequence analysisBITS: Basics of sequence analysis
BITS: Basics of sequence analysisBITS
 
BITS - Introduction to Mass Spec data generation
BITS - Introduction to Mass Spec data generationBITS - Introduction to Mass Spec data generation
BITS - Introduction to Mass Spec data generationBITS
 
BITS - Comparative genomics on the genome level
BITS - Comparative genomics on the genome levelBITS - Comparative genomics on the genome level
BITS - Comparative genomics on the genome levelBITS
 
BITS - Protein inference from mass spectrometry data
BITS - Protein inference from mass spectrometry dataBITS - Protein inference from mass spectrometry data
BITS - Protein inference from mass spectrometry dataBITS
 
RNA-seq: analysis of raw data and preprocessing - part 2
RNA-seq: analysis of raw data and preprocessing - part 2RNA-seq: analysis of raw data and preprocessing - part 2
RNA-seq: analysis of raw data and preprocessing - part 2BITS
 

Viewers also liked (15)

Lokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utvecklingLokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
Lokala banksystem utan vinstkrav - för tillväxt och hållbar utveckling
 
Genevestigator
GenevestigatorGenevestigator
Genevestigator
 
Projekt sociala ekonomin i motala - slutrapport 2015
Projekt sociala ekonomin i motala - slutrapport 2015Projekt sociala ekonomin i motala - slutrapport 2015
Projekt sociala ekonomin i motala - slutrapport 2015
 
Besök kimstad rapport förstudie
Besök kimstad rapport förstudieBesök kimstad rapport förstudie
Besök kimstad rapport förstudie
 
BITS training - UCSC Genome Browser - Part 2
BITS training - UCSC Genome Browser - Part 2BITS training - UCSC Genome Browser - Part 2
BITS training - UCSC Genome Browser - Part 2
 
Vnti11 basics course
Vnti11 basics courseVnti11 basics course
Vnti11 basics course
 
BITS - Introduction to comparative genomics
BITS - Introduction to comparative genomicsBITS - Introduction to comparative genomics
BITS - Introduction to comparative genomics
 
BITS: UCSC genome browser - Part 1
BITS: UCSC genome browser - Part 1BITS: UCSC genome browser - Part 1
BITS: UCSC genome browser - Part 1
 
RNA-seq: Mapping and quality control - part 3
RNA-seq: Mapping and quality control - part 3RNA-seq: Mapping and quality control - part 3
RNA-seq: Mapping and quality control - part 3
 
BITS: Introduction to linux, distributions and installation
BITS: Introduction to linux, distributions and installationBITS: Introduction to linux, distributions and installation
BITS: Introduction to linux, distributions and installation
 
BITS: Basics of sequence analysis
BITS: Basics of sequence analysisBITS: Basics of sequence analysis
BITS: Basics of sequence analysis
 
BITS - Introduction to Mass Spec data generation
BITS - Introduction to Mass Spec data generationBITS - Introduction to Mass Spec data generation
BITS - Introduction to Mass Spec data generation
 
BITS - Comparative genomics on the genome level
BITS - Comparative genomics on the genome levelBITS - Comparative genomics on the genome level
BITS - Comparative genomics on the genome level
 
BITS - Protein inference from mass spectrometry data
BITS - Protein inference from mass spectrometry dataBITS - Protein inference from mass spectrometry data
BITS - Protein inference from mass spectrometry data
 
RNA-seq: analysis of raw data and preprocessing - part 2
RNA-seq: analysis of raw data and preprocessing - part 2RNA-seq: analysis of raw data and preprocessing - part 2
RNA-seq: analysis of raw data and preprocessing - part 2
 

Similar to BITS: Introduction to Linux - Software installation the graphical and the command-line way

Module 3 Using Linux Softwares.
Module 3 Using Linux Softwares.Module 3 Using Linux Softwares.
Module 3 Using Linux Softwares.Tushar B Kute
 
Unix Basics 04sp
Unix Basics 04spUnix Basics 04sp
Unix Basics 04spDr.Ravi
 
linux-lecture4.ppt
linux-lecture4.pptlinux-lecture4.ppt
linux-lecture4.pptLuigysToro
 
OS Lab Manual.pdf
OS Lab Manual.pdfOS Lab Manual.pdf
OS Lab Manual.pdfQucHunh15
 
Devops for beginners
Devops for beginnersDevops for beginners
Devops for beginnersVivek Parihar
 
Linux commands and file structure
Linux commands and file structureLinux commands and file structure
Linux commands and file structureSreenatha Reddy K R
 
Unix/Linux Basic Commands and Shell Script
Unix/Linux Basic Commands and Shell ScriptUnix/Linux Basic Commands and Shell Script
Unix/Linux Basic Commands and Shell Scriptsbmguys
 
Chapter 2 Introduction to Unix Concepts
Chapter 2 Introduction to Unix ConceptsChapter 2 Introduction to Unix Concepts
Chapter 2 Introduction to Unix ConceptsMeenalJabde
 

Similar to BITS: Introduction to Linux - Software installation the graphical and the command-line way (20)

Module 3 Using Linux Softwares.
Module 3 Using Linux Softwares.Module 3 Using Linux Softwares.
Module 3 Using Linux Softwares.
 
Unix Basics 04sp
Unix Basics 04spUnix Basics 04sp
Unix Basics 04sp
 
Operating system lab manual
Operating system lab manualOperating system lab manual
Operating system lab manual
 
Linux
Linux Linux
Linux
 
Edubooktraining
EdubooktrainingEdubooktraining
Edubooktraining
 
Linux
LinuxLinux
Linux
 
linux-lecture4.ppt
linux-lecture4.pptlinux-lecture4.ppt
linux-lecture4.ppt
 
OS Lab Manual.pdf
OS Lab Manual.pdfOS Lab Manual.pdf
OS Lab Manual.pdf
 
Nithi
NithiNithi
Nithi
 
Devops for beginners
Devops for beginnersDevops for beginners
Devops for beginners
 
Linux
LinuxLinux
Linux
 
Linux commands and file structure
Linux commands and file structureLinux commands and file structure
Linux commands and file structure
 
Divya
DivyaDivya
Divya
 
Divya
DivyaDivya
Divya
 
Unix
UnixUnix
Unix
 
Unix/Linux Basic Commands and Shell Script
Unix/Linux Basic Commands and Shell ScriptUnix/Linux Basic Commands and Shell Script
Unix/Linux Basic Commands and Shell Script
 
60761 linux
60761 linux60761 linux
60761 linux
 
Chapter 2 Introduction to Unix Concepts
Chapter 2 Introduction to Unix ConceptsChapter 2 Introduction to Unix Concepts
Chapter 2 Introduction to Unix Concepts
 
Linuxppt
LinuxpptLinuxppt
Linuxppt
 
Linux Presentation
Linux PresentationLinux Presentation
Linux Presentation
 

More from BITS

RNA-seq for DE analysis: detecting differential expression - part 5
RNA-seq for DE analysis: detecting differential expression - part 5RNA-seq for DE analysis: detecting differential expression - part 5
RNA-seq for DE analysis: detecting differential expression - part 5BITS
 
RNA-seq for DE analysis: extracting counts and QC - part 4
RNA-seq for DE analysis: extracting counts and QC - part 4RNA-seq for DE analysis: extracting counts and QC - part 4
RNA-seq for DE analysis: extracting counts and QC - part 4BITS
 
RNA-seq for DE analysis: the biology behind observed changes - part 6
RNA-seq for DE analysis: the biology behind observed changes - part 6RNA-seq for DE analysis: the biology behind observed changes - part 6
RNA-seq for DE analysis: the biology behind observed changes - part 6BITS
 
RNA-seq: general concept, goal and experimental design - part 1
RNA-seq: general concept, goal and experimental design - part 1RNA-seq: general concept, goal and experimental design - part 1
RNA-seq: general concept, goal and experimental design - part 1BITS
 
Introduction to Linux for bioinformatics
Introduction to Linux for bioinformaticsIntroduction to Linux for bioinformatics
Introduction to Linux for bioinformaticsBITS
 
BITS - Genevestigator to easily access transcriptomics data
BITS - Genevestigator to easily access transcriptomics dataBITS - Genevestigator to easily access transcriptomics data
BITS - Genevestigator to easily access transcriptomics dataBITS
 
BITS - Comparative genomics: the Contra tool
BITS - Comparative genomics: the Contra toolBITS - Comparative genomics: the Contra tool
BITS - Comparative genomics: the Contra toolBITS
 
BITS - Comparative genomics: gene family analysis
BITS - Comparative genomics: gene family analysisBITS - Comparative genomics: gene family analysis
BITS - Comparative genomics: gene family analysisBITS
 
BITS - Overview of sequence databases for mass spectrometry data analysis
BITS - Overview of sequence databases for mass spectrometry data analysisBITS - Overview of sequence databases for mass spectrometry data analysis
BITS - Overview of sequence databases for mass spectrometry data analysisBITS
 
BITS - Search engines for mass spec data
BITS - Search engines for mass spec dataBITS - Search engines for mass spec data
BITS - Search engines for mass spec dataBITS
 
BITS - Introduction to proteomics
BITS - Introduction to proteomicsBITS - Introduction to proteomics
BITS - Introduction to proteomicsBITS
 
Marcs (bio)perl course
Marcs (bio)perl courseMarcs (bio)perl course
Marcs (bio)perl courseBITS
 
Basics statistics
Basics statistics Basics statistics
Basics statistics BITS
 
Cytoscape: Integrating biological networks
Cytoscape: Integrating biological networksCytoscape: Integrating biological networks
Cytoscape: Integrating biological networksBITS
 
Cytoscape: Gene coexppression and PPI networks
Cytoscape: Gene coexppression and PPI networksCytoscape: Gene coexppression and PPI networks
Cytoscape: Gene coexppression and PPI networksBITS
 
Bits protein structure
Bits protein structureBits protein structure
Bits protein structureBITS
 

More from BITS (16)

RNA-seq for DE analysis: detecting differential expression - part 5
RNA-seq for DE analysis: detecting differential expression - part 5RNA-seq for DE analysis: detecting differential expression - part 5
RNA-seq for DE analysis: detecting differential expression - part 5
 
RNA-seq for DE analysis: extracting counts and QC - part 4
RNA-seq for DE analysis: extracting counts and QC - part 4RNA-seq for DE analysis: extracting counts and QC - part 4
RNA-seq for DE analysis: extracting counts and QC - part 4
 
RNA-seq for DE analysis: the biology behind observed changes - part 6
RNA-seq for DE analysis: the biology behind observed changes - part 6RNA-seq for DE analysis: the biology behind observed changes - part 6
RNA-seq for DE analysis: the biology behind observed changes - part 6
 
RNA-seq: general concept, goal and experimental design - part 1
RNA-seq: general concept, goal and experimental design - part 1RNA-seq: general concept, goal and experimental design - part 1
RNA-seq: general concept, goal and experimental design - part 1
 
Introduction to Linux for bioinformatics
Introduction to Linux for bioinformaticsIntroduction to Linux for bioinformatics
Introduction to Linux for bioinformatics
 
BITS - Genevestigator to easily access transcriptomics data
BITS - Genevestigator to easily access transcriptomics dataBITS - Genevestigator to easily access transcriptomics data
BITS - Genevestigator to easily access transcriptomics data
 
BITS - Comparative genomics: the Contra tool
BITS - Comparative genomics: the Contra toolBITS - Comparative genomics: the Contra tool
BITS - Comparative genomics: the Contra tool
 
BITS - Comparative genomics: gene family analysis
BITS - Comparative genomics: gene family analysisBITS - Comparative genomics: gene family analysis
BITS - Comparative genomics: gene family analysis
 
BITS - Overview of sequence databases for mass spectrometry data analysis
BITS - Overview of sequence databases for mass spectrometry data analysisBITS - Overview of sequence databases for mass spectrometry data analysis
BITS - Overview of sequence databases for mass spectrometry data analysis
 
BITS - Search engines for mass spec data
BITS - Search engines for mass spec dataBITS - Search engines for mass spec data
BITS - Search engines for mass spec data
 
BITS - Introduction to proteomics
BITS - Introduction to proteomicsBITS - Introduction to proteomics
BITS - Introduction to proteomics
 
Marcs (bio)perl course
Marcs (bio)perl courseMarcs (bio)perl course
Marcs (bio)perl course
 
Basics statistics
Basics statistics Basics statistics
Basics statistics
 
Cytoscape: Integrating biological networks
Cytoscape: Integrating biological networksCytoscape: Integrating biological networks
Cytoscape: Integrating biological networks
 
Cytoscape: Gene coexppression and PPI networks
Cytoscape: Gene coexppression and PPI networksCytoscape: Gene coexppression and PPI networks
Cytoscape: Gene coexppression and PPI networks
 
Bits protein structure
Bits protein structureBits protein structure
Bits protein structure
 

Recently uploaded

ANG SEKTOR NG agrikultura.pptx QUARTER 4
ANG SEKTOR NG agrikultura.pptx QUARTER 4ANG SEKTOR NG agrikultura.pptx QUARTER 4
ANG SEKTOR NG agrikultura.pptx QUARTER 4MiaBumagat1
 
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdf
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdfInclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdf
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdfTechSoup
 
Proudly South Africa powerpoint Thorisha.pptx
Proudly South Africa powerpoint Thorisha.pptxProudly South Africa powerpoint Thorisha.pptx
Proudly South Africa powerpoint Thorisha.pptxthorishapillay1
 
Grade 9 Q4-MELC1-Active and Passive Voice.pptx
Grade 9 Q4-MELC1-Active and Passive Voice.pptxGrade 9 Q4-MELC1-Active and Passive Voice.pptx
Grade 9 Q4-MELC1-Active and Passive Voice.pptxChelloAnnAsuncion2
 
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...JhezDiaz1
 
Judging the Relevance and worth of ideas part 2.pptx
Judging the Relevance and worth of ideas part 2.pptxJudging the Relevance and worth of ideas part 2.pptx
Judging the Relevance and worth of ideas part 2.pptxSherlyMaeNeri
 
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTiammrhaywood
 
Influencing policy (training slides from Fast Track Impact)
Influencing policy (training slides from Fast Track Impact)Influencing policy (training slides from Fast Track Impact)
Influencing policy (training slides from Fast Track Impact)Mark Reed
 
Science 7 Quarter 4 Module 2: Natural Resources.pptx
Science 7 Quarter 4 Module 2: Natural Resources.pptxScience 7 Quarter 4 Module 2: Natural Resources.pptx
Science 7 Quarter 4 Module 2: Natural Resources.pptxMaryGraceBautista27
 
How to do quick user assign in kanban in Odoo 17 ERP
How to do quick user assign in kanban in Odoo 17 ERPHow to do quick user assign in kanban in Odoo 17 ERP
How to do quick user assign in kanban in Odoo 17 ERPCeline George
 
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17Celine George
 
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptx
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptxMULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptx
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptxAnupkumar Sharma
 
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdf
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdfLike-prefer-love -hate+verb+ing & silent letters & citizenship text.pdf
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdfMr Bounab Samir
 
Q4 English4 Week3 PPT Melcnmg-based.pptx
Q4 English4 Week3 PPT Melcnmg-based.pptxQ4 English4 Week3 PPT Melcnmg-based.pptx
Q4 English4 Week3 PPT Melcnmg-based.pptxnelietumpap1
 
Roles & Responsibilities in Pharmacovigilance
Roles & Responsibilities in PharmacovigilanceRoles & Responsibilities in Pharmacovigilance
Roles & Responsibilities in PharmacovigilanceSamikshaHamane
 
ACC 2024 Chronicles. Cardiology. Exam.pdf
ACC 2024 Chronicles. Cardiology. Exam.pdfACC 2024 Chronicles. Cardiology. Exam.pdf
ACC 2024 Chronicles. Cardiology. Exam.pdfSpandanaRallapalli
 
Computed Fields and api Depends in the Odoo 17
Computed Fields and api Depends in the Odoo 17Computed Fields and api Depends in the Odoo 17
Computed Fields and api Depends in the Odoo 17Celine George
 

Recently uploaded (20)

ANG SEKTOR NG agrikultura.pptx QUARTER 4
ANG SEKTOR NG agrikultura.pptx QUARTER 4ANG SEKTOR NG agrikultura.pptx QUARTER 4
ANG SEKTOR NG agrikultura.pptx QUARTER 4
 
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdf
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdfInclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdf
Inclusivity Essentials_ Creating Accessible Websites for Nonprofits .pdf
 
Proudly South Africa powerpoint Thorisha.pptx
Proudly South Africa powerpoint Thorisha.pptxProudly South Africa powerpoint Thorisha.pptx
Proudly South Africa powerpoint Thorisha.pptx
 
Grade 9 Q4-MELC1-Active and Passive Voice.pptx
Grade 9 Q4-MELC1-Active and Passive Voice.pptxGrade 9 Q4-MELC1-Active and Passive Voice.pptx
Grade 9 Q4-MELC1-Active and Passive Voice.pptx
 
YOUVE GOT EMAIL_FINALS_EL_DORADO_2024.pptx
YOUVE GOT EMAIL_FINALS_EL_DORADO_2024.pptxYOUVE GOT EMAIL_FINALS_EL_DORADO_2024.pptx
YOUVE GOT EMAIL_FINALS_EL_DORADO_2024.pptx
 
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...
ENGLISH 7_Q4_LESSON 2_ Employing a Variety of Strategies for Effective Interp...
 
Judging the Relevance and worth of ideas part 2.pptx
Judging the Relevance and worth of ideas part 2.pptxJudging the Relevance and worth of ideas part 2.pptx
Judging the Relevance and worth of ideas part 2.pptx
 
Raw materials used in Herbal Cosmetics.pptx
Raw materials used in Herbal Cosmetics.pptxRaw materials used in Herbal Cosmetics.pptx
Raw materials used in Herbal Cosmetics.pptx
 
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPTECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
ECONOMIC CONTEXT - LONG FORM TV DRAMA - PPT
 
Influencing policy (training slides from Fast Track Impact)
Influencing policy (training slides from Fast Track Impact)Influencing policy (training slides from Fast Track Impact)
Influencing policy (training slides from Fast Track Impact)
 
Science 7 Quarter 4 Module 2: Natural Resources.pptx
Science 7 Quarter 4 Module 2: Natural Resources.pptxScience 7 Quarter 4 Module 2: Natural Resources.pptx
Science 7 Quarter 4 Module 2: Natural Resources.pptx
 
How to do quick user assign in kanban in Odoo 17 ERP
How to do quick user assign in kanban in Odoo 17 ERPHow to do quick user assign in kanban in Odoo 17 ERP
How to do quick user assign in kanban in Odoo 17 ERP
 
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17
Incoming and Outgoing Shipments in 3 STEPS Using Odoo 17
 
FINALS_OF_LEFT_ON_C'N_EL_DORADO_2024.pptx
FINALS_OF_LEFT_ON_C'N_EL_DORADO_2024.pptxFINALS_OF_LEFT_ON_C'N_EL_DORADO_2024.pptx
FINALS_OF_LEFT_ON_C'N_EL_DORADO_2024.pptx
 
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptx
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptxMULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptx
MULTIDISCIPLINRY NATURE OF THE ENVIRONMENTAL STUDIES.pptx
 
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdf
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdfLike-prefer-love -hate+verb+ing & silent letters & citizenship text.pdf
Like-prefer-love -hate+verb+ing & silent letters & citizenship text.pdf
 
Q4 English4 Week3 PPT Melcnmg-based.pptx
Q4 English4 Week3 PPT Melcnmg-based.pptxQ4 English4 Week3 PPT Melcnmg-based.pptx
Q4 English4 Week3 PPT Melcnmg-based.pptx
 
Roles & Responsibilities in Pharmacovigilance
Roles & Responsibilities in PharmacovigilanceRoles & Responsibilities in Pharmacovigilance
Roles & Responsibilities in Pharmacovigilance
 
ACC 2024 Chronicles. Cardiology. Exam.pdf
ACC 2024 Chronicles. Cardiology. Exam.pdfACC 2024 Chronicles. Cardiology. Exam.pdf
ACC 2024 Chronicles. Cardiology. Exam.pdf
 
Computed Fields and api Depends in the Odoo 17
Computed Fields and api Depends in the Odoo 17Computed Fields and api Depends in the Odoo 17
Computed Fields and api Depends in the Odoo 17
 

BITS: Introduction to Linux - Software installation the graphical and the command-line way