BioUno is an open source project that uses continuous integration tools like Jenkins to create biology pipelines. It was created by Bruno Kinoshita in Brazil as a way to apply DevOps practices to biology. BioUno uses Jenkins for its jobs, notifications, and integration with other tools. The next steps are to enhance documentation, find new developers and users, and compare BioUno to other similar biology tools.

1. Creating Biology Pipelines with
BioUno
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

2. Who a m I

B r u n o P . K in o s h it a

27 yo, Brazilian, from Sao Paulo, Sao Paulo

Software P r o g r a m m e r @ T u p i L a b s

Participating in several OSS (Apache
Commons, tap4j, Jenkins, TestLink,
TunesViewer, …)

k in o w @ p a c h e . o r g
a

@ i n o w – Twitter/GitHub/FreeNode
k
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

3. W h a t ' s B io U n o ?

A n O p e n S o u r c e p r o je c t t h a t
u s e s c o n t in u o u s in t e g r a t io n
t o o ls a n d t e c h n iq u e s t o
c r e a t e b io lo g y p ip e lin e s

One of the tools used is J e n k i n s , an
O p e n S o u r c e build server

It has p l u g - i n s ...

And an update center...
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
Then why didn't you name it bio-j
h ://www.tu p ilab s.co m
ttp enkins?

4. B io U n o . W h o c r e a t e d
it ? H o w ? W h e n ?

It is an interesting story that started some time
ago in Brazil...

in an Irish Pub
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

5. W h y J e n k in s ?

An a w e s ome O pe n S ourc e
c o m m u n i t y (more than 100 developers)

Simple w e b interface

J o b s c h e d u le a n d m a n a g e m e n t

N o t if ic a t io n s

C l o u d computing

B i g D a t a (Hadoop)
 no
Bru
Existing integration with many programming
P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

6. N e xt s te p s

Finish the u p d a t e c e n t e r infrastructure

Write more p l u g -i n s

Enhance the user/developer
d o c u m e n t a t io n

Prepare a small public c o m p u t e r
f a c i l i t y for BioUno

Find new d e v e l o p e r s & u s e r s

Comparison with Taverna, Galaxy and other
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
similar tools
h ttp ://www.tu p ilab s.co m

7. DEMO
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

8. A n y q u e s t io n s ?
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m

9. Th a n k yo u ! D a n k e !
O b r ig a d o ! G r a c ia s !
M e r c i! A r ig a t o u !
w w w . b io u n o . o r g
k in o w @ p a c h e . o r g
a
@ in o w , @ u p ila b s
k t
Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg
h ttp ://www.tu p ilab s.co m