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Similarity
1.
Sequence Similarity
Searching
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8.
9.
Simple Dot Plot
10.
Dot plot filtered
with 4 base window and 75% identity
11.
Dot plot of
real data
12.
Global vs. Local
Alignments
13.
14.
The PAM 250
scoring matrix
15.
16.
17.
FASTA Algorithm
18.
19.
FASTA Alignments
20.
21.
22.
23.
24.
25.
26.
27.
28.
BLAST Algorithm
29.
30.
31.
32.
Extend hits one
base at a time
33.
34.
35.
36.
37.
The PAM 250
scoring matrix
38.
39.
BLAST Results -
Summary
40.
BLAST Results -
List
41.
BLAST Results -
Alignment > gi|17556182|ref|NP_497582.1| Predicted CDS, phosphatidylinositol transfer protein [Caenorhabditis elegans] gi|14574401|gb|AAK68521.1|AC024814_1 Hypothetical protein Y54F10AR.1 [Caenorhabditis elegans] Length = 336 Score = 283 bits (723), Expect = 8e-75 Identities = 144/270 (53%), Positives = 186/270 (68%), Gaps = 13/270 (4%) Query: 48 KEYRVILPVSVDEYQVGQLYSVAEASKNXXXXXXXXXXXXXXPYEK----DGE--KGQYT 101 K+ RV+LP+SV+EYQVGQL+SVAEASK P++ +G+ KGQYT Sbjct: 70 KKSRVVLPMSVEEYQVGQLWSVAEASKAETGGGEGVEVLKNEPFDNVPLLNGQFTKGQYT 129 Query: 102 HKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITN-EYMKEDFLIKIETWHKP 160 HKIYHLQSKVP +R +AP+G+L IHE+AWNAYPYC+TV+TN +YMKE+F +KIET H P Sbjct: 130 HKIYHLQSKVPAILRKIAPKGSLAIHEEAWNAYPYCKTVVTNPDYMKENFYVKIETIHLP 189 Query: 161 DLGTQENVHKLEPEAWKHVEAVYIDIADRSQVL-SKDYKAEEDPAKFKSIKTGRGPLGPN 219 D GT EN H L+ + E V I+IA+ + L S D + P+KF+S KTGRGPL N Sbjct: 190 DNGTTENAHGLKGDELAKREVVNINIANDHEYLNSGDLHPDSTPSKFQSTKTGRGPLSGN 249 Query: 220 WKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWV 279 WK + P MCAYKLVTV FKW+G Q VEN+ H Q RLF+ FHR++FCW+DKW Sbjct: 250 WKDSVQ-----PVMCAYKLVTVYFKWFGFQKIVENYAHTQYPRLFSKFHREVFCWIDKWH 304 Query: 280 DLTMDDIRRMEEETKRQLDEMRQKDPVKGM 309 LTM DIR +E + +++L+E R+ V+GM Sbjct: 305 GLTMVDIREIEAKAQKELEEQRKSGQVRGM 334
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