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Theoretical Genetics
                                     Stephen Taylor


http://sciencevideos.wordpress.com                    4.3 Theoretical Genetics   1
Definitions                             This image shows a pair of homologous chromosomes.
                                        Name and annotate the labeled features.




   http://sciencevideos.wordpress.com                                  4.3 Theoretical Genetics   2
Definitions                                   This image shows a pair of homologous chromosomes.
                                              Name and annotate the labeled features.

  Genotype
  The combination of alleles                                             Homozygous dominant
  of a gene carried by an organism                                       Having two copies of the same
                                                                         dominant allele
  Phenotype
  The expression of alleles                                              Homozygous recessive
  of a gene carried by an organism                                       Having two copies of the same
                                                                         recessive allele. Recessive alleles are
                         Centromere                                      only expressed when homozygous.
    Joins chromatids in cell division
                                                                        Codominant
                                  Alleles                               Pairs of alleles which are both
       Different versions of a gene                                     expressed when present.
   Dominant alleles = capital letter
Recessive alleles = lower-case letter
                                                                         Heterozygous
                                                                         Having two different alleles.
                                                                         The dominant allele is expressed.


                                  Carrier                               Gene loci
           Heterozygous carrier of a                                    Specific positions of genes on a
    recessive disease-causing allele                                    chromosome


         http://sciencevideos.wordpress.com                                    4.3 Theoretical Genetics            3
Making Babies
1. Count the chromosomes in your envelope - there
   should be 46 in total.
2. Shuffle the chromosomes, so that they are well
   mixed up. Which aspects of meiosis and sexual
   reproduction give genetic variation?
        • Crossing-over in prophase I
        • Random orientation in metaphase I and II
        • Random fertilisation

3. Now arrange them in a karyotype (don't turn them
   over - leave them as they were).
                                                                                      Activity from:
                                                                     http://www.nclark.net/Genetics
4. What is the gender of your baby?
   Explain how gender is inherited in humans.




       http://sciencevideos.wordpress.com             4.3 Theoretical Genetics                     4
Making Babies


        •    Crossing-over in prophase I
        •    Random orientation in metaphase I and II
        •    Random fertilisation




List all the traits in a table. Use the key above to determine the genotypes and phenotypes
of your offspring. Draw a picture of your beautiful child’s face!

HL identify traits which are polygenic, involve gene interactions and some which are linked.
                                                                                                   Activity from:
                                                                                  http://www.nclark.net/Genetics


        http://sciencevideos.wordpress.com                         4.3 Theoretical Genetics                     5
Explain this                            Mendel crossed some yellow peas with some yellow
                                        peas. Most offspring were yellow but some were green!




                                                                                                                    Mendel from:
                                                                  http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

   http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics                            6
Segregation                                 “alleles of each gene separate into different
                                            gametes when the individual produces gametes”




 The yellow parent peas must
                                                                         Mendel did not know about
 be heterozygous. The yellow
                                                                       DNA, chromosomes or meiosis.
 phenotype is expressed.
                                                                       Through his experiments he did
 Through meiosis and
                                                                       work out that ‘heritable factors’
 fertilisation, some offspring
                                                                           (genes) were passed on and
 peas are homozygous
                                                                        that these could have different
 recessive – they express a
                                                                                      versions (alleles).
 green colour.




                                                                                                                     Mendel from:
                                                                   http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

       http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics                            7
Segregation                                    “alleles of each gene separate into different
                                               gametes when the individual produces gametes”


 F0
             Genotype:                      Yy                     Yy            Alleles segregate during
                                                                                 meiosis (anaphase I) and end
                                                                                 up in different haploid gametes.
             Gametes:                  Y or y                    Y or y
        Punnet Grid:                       gametes




            Genotypes:
 F1       Phenotypes:

  Phenotype ratio:                                                                                                      Mendel from:
                                                                      http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

      http://sciencevideos.wordpress.com                                          4.3 Theoretical Genetics                            8
Monohybrid Cross                                     Crossing a single trait.



 F0
             Genotype:                      Yy            Yy            Alleles segregate during
                                                                        meiosis (anaphase I) and end
                                                                        up in different haploid gametes.
             Gametes:                  Y or y          Y or y
                                                                        Fertilisation results in diploid
        Punnet Grid:                       gametes                      zygotes.

                                                                        A punnet grid can be used to
                                                                        deduce the potential outcomes
                                                                        of the cross and to calculate the
                                                                        expected ratio of phenotypes in
                                                                        the next generation (F1).

            Genotypes:
F1        Phenotypes:

  Phenotype ratio:                                                                                             Mendel from:
                                                             http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

      http://sciencevideos.wordpress.com                                 4.3 Theoretical Genetics                            9
Monohybrid Cross                                          Crossing a single trait.



 F0
             Genotype:                      Yy                 Yy            Alleles segregate during
                                                                             meiosis (anaphase I) and end
                                                                             up in different haploid gametes.
             Gametes:                  Y or y               Y or y
                                                                             Fertilisation results in diploid
        Punnet Grid:                       gametes   Y     y                 zygotes.

                                                                             A punnet grid can be used to
                                             Y       YY   Yy                 deduce the potential outcomes
                                                                             of the cross and to calculate the
                                             y       Yy   yy                 expected ratio of phenotypes in
                                                                             the next generation (F1).

            Genotypes:
F1        Phenotypes:

  Phenotype ratio:                                                                                                  Mendel from:
                                                                  http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

      http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics                          10
Monohybrid Cross                                               Crossing a single trait.



 F0
             Genotype:                      Yy                      Yy              Alleles segregate during
                                                                                    meiosis (anaphase I) and end
                                                                                    up in different haploid gametes.
             Gametes:                  Y or y                    Y or y
                                                                                    Fertilisation results in diploid
        Punnet Grid:                       gametes    Y         y                   zygotes.

                                                                                    A punnet grid can be used to
                                             Y       YY        Yy                   deduce the potential outcomes
                                                                                    of the cross and to calculate the
                                             y       Yy        yy                   expected ratio of phenotypes in
                                                                                    the next generation (F1).

            Genotypes:                         YY    Yy   Yy        yy              Ratios are written in the
F1        Phenotypes:
                                                                                    simplest mathematical form.


  Phenotype ratio:                                         3:1                                                             Mendel from:
                                                                         http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm

      http://sciencevideos.wordpress.com                                             4.3 Theoretical Genetics                          11
Monohybrid Cross                                        What is the expected ratio of phenotypes
                                                        in this monohybrid cross?


 F0         Phenotype:
                                                                                    Key to alleles:
                                                                                    Y = yellow
                                                                                    y = green
             Genotype:

                           Homozygous recessive      Homozygous recessive


        Punnet Grid:                       gametes




            Genotypes:
F1        Phenotypes:

  Phenotype ratio:
      http://sciencevideos.wordpress.com                              4.3 Theoretical Genetics        12
Monohybrid Cross                                               What is the expected ratio of phenotypes
                                                               in this monohybrid cross?


 F0         Phenotype:
                                                                                           Key to alleles:
                                                                                           Y = yellow
                                                                                           y = green
             Genotype:                      yy                       yy
                           Homozygous recessive           Homozygous recessive


        Punnet Grid:                       gametes    y          y
                                             y       yy         yy
                                             y       yy         yy
            Genotypes:                         yy    yy   yy         yy
F1        Phenotypes:

  Phenotype ratio:                                   All green
      http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics        13
Monohybrid Cross                                     What is the expected ratio of phenotypes
                                                     in this monohybrid cross?


 F0         Phenotype:
                                                                                  Key to alleles:
                                                                                  Y = yellow
                                                                                  y = green
             Genotype:

                           Homozygous recessive      Heterozygous


        Punnet Grid:                       gametes




            Genotypes:
F1        Phenotypes:

  Phenotype ratio:
      http://sciencevideos.wordpress.com                            4.3 Theoretical Genetics        14
Monohybrid Cross                                                 What is the expected ratio of phenotypes
                                                                 in this monohybrid cross?


 F0         Phenotype:
                                                                                              Key to alleles:
                                                                                              Y = yellow
                                                                                              y = green
             Genotype:                      yy                         Yy
                           Homozygous recessive                  Heterozygous


        Punnet Grid:                       gametes    Y           y
                                             y       Yy           yy
                                             y       Yy           yy
            Genotypes:                         Yy    Yy     yy         yy
F1        Phenotypes:

  Phenotype ratio:                                    1:1
      http://sciencevideos.wordpress.com                                        4.3 Theoretical Genetics        15
Monohybrid Cross                                     What is the expected ratio of phenotypes
                                                     in this monohybrid cross?


 F0         Phenotype:
                                                                                  Key to alleles:
                                                                                  Y = yellow
                                                                                  y = green
             Genotype:

                          Homozygous dominant        Heterozygous


        Punnet Grid:                       gametes




            Genotypes:
F1        Phenotypes:

  Phenotype ratio:
      http://sciencevideos.wordpress.com                            4.3 Theoretical Genetics        16
Monohybrid Cross                                                  What is the expected ratio of phenotypes
                                                                  in this monohybrid cross?


 F0         Phenotype:
                                                                                               Key to alleles:
                                                                                               Y = yellow
                                                                                               y = green
             Genotype:                      YY                          Yy
                          Homozygous dominant                     Heterozygous


        Punnet Grid:                       gametes       Y         y
                                             Y          YY         Yy
                                             Y          YY         Yy
            Genotypes:                         YY       YY   Yy         Yy
F1        Phenotypes:

  Phenotype ratio:                                   All yellow
      http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics        17
Test Cross                             Used to determine the genotype of an unknown individual.
                                       The unknown is crossed with a known homozygous recessive.


 F0         Phenotype:
                                                                                        Key to alleles:
                                                                                        R = Red flower
                                                                                        r = white
             Genotype:                     R?                   r r
                                     unknown             Homozygous recessive
 Possible outcomes:

 F1       Phenotypes:
            Unknown parent = RR                                  Unknown parent = Rr

           gametes                                            gametes




      http://sciencevideos.wordpress.com                                  4.3 Theoretical Genetics        18
Test Cross                             Used to determine the genotype of an unknown individual.
                                       The unknown is crossed with a known homozygous recessive.


 F0         Phenotype:
                                                                                        Key to alleles:
                                                                                        R = Red flower
                                                                                        r = white
             Genotype:                     R?                   r r
                                     unknown             Homozygous recessive
 Possible outcomes:

 F1       Phenotypes:                All red                   Some white, some red
            Unknown parent = RR                                  Unknown parent = Rr

           gametes              r            r                gametes      r               r
               R              Rr            Rr                   R        Rr              Rr
               R              Rr            Rr                   r        rr               rr

      http://sciencevideos.wordpress.com                                  4.3 Theoretical Genetics        19
Career-related Case Study
                         “According to the US Bureau of Labor Statistics, the graduate of today will change
                         career four to six times in a lifetime. By one estimate, 65 per cent of the jobs that
                         will be available upon college graduation for students now entering high school
                         (that's eight years from now) do not yet exist. Consider the new interdisciplinary
                         field of genetic counselling, which combines biological science with social work and
                         ethics - it was ranked as one of the "top 10" career choices of 2010 because it
                         offered far more openings than could be filled by qualified applicants.”
 From the Times Higher Education Supplement – “So Last Century”
 http://www.timeshighereducation.co.uk/story.asp?sectioncode=26&storycode=415941&c=2




          http://sciencevideos.wordpress.com                                           4.3 Theoretical Genetics   20
Career-related Case Study
                         “According to the US Bureau of Labor Statistics, the graduate of today will change
                         career four to six times in a lifetime. By one estimate, 65 per cent of the jobs that
                         will be available upon college graduation for students now entering high school
                         (that's eight years from now) do not yet exist. Consider the new interdisciplinary
                         field of genetic counselling, which combines biological science with social work and
                         ethics - it was ranked as one of the "top 10" career choices of 2010 because it
                         offered far more openings than could be filled by qualified applicants.”
 From the Times Higher Education Supplement – “So Last Century”
 http://www.timeshighereducation.co.uk/story.asp?sectioncode=26&storycode=415941&c=2


 You are a genetic counselor. A couple walk into your clinic and are concerned about
 their pregnancy. They each have one parent who is affected by phenylketonuria (PKU)
 and one parent who has no family history. Explain PKU and its inheritance to them.
 Deduce the chance of having a child with PKU and how it can be tested and treated.

 Use the following tools in your explanations:
 • Pedigree chart
 • Punnet grid
 • Diagrams




          http://sciencevideos.wordpress.com                                           4.3 Theoretical Genetics   21
Phenylketonuria (PKU)                                                                 Clinical example.

Pedigree charts can be used to trace family histories and deduce genotypes and risk in the case
of inherited gene-related disorders. Here is a pedigree chart for this family history.


                                                                        key       female          male
I
                                                                      affected

                                                                        Not
II                                                                    Affected

                     A                           B                    deceased


III
                                             ?
                                                 Is PKU dominant or recessive? How do you know?
                                                 •
                                                 •




        http://sciencevideos.wordpress.com                             4.3 Theoretical Genetics           22
Phenylketonuria (PKU)                                                                   Clinical example.

Pedigree charts can be used to trace family histories and deduce genotypes and risk in the case
of inherited gene-related disorders. Here is a pedigree chart for this family history.


                                                                          key       female          male
I
                                                                        affected

                                                                          Not
II                                                                      Affected

                     A                           B                      deceased


III
                                             ?
                                                 Is PKU dominant or recessive? How do you know?
                                                 • Recessive
                                                 • Unaffected mother in Gen I has produced
                                                     affected II A. Mother must have been a carrier.




        http://sciencevideos.wordpress.com                               4.3 Theoretical Genetics           23
Phenylketonuria (PKU)                                                                                     Clinical example.


                                                A mis-sense mutation in the gene that produces tyrosine
                                                hydroxylase means that phenylalanine cannot be converted
                                                to tyrosine in the body - so it builds up.

                                                This results in brain developmental problems and seizures.
                                                It is progressive, so it must be diagnosed and treated early.

                                                Dairy, breastmilk, meat, nuts and aspartame must be
                                                avoided, as they are rich in phenylalanine.




                                                                                        Diagnosis- blood test taken at 6-7 days after birth
   The Boy with PKU ideo clip from:                          http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/
   http://www.youtube.com/watch?v=KUJVujhHxPQ

   http://sciencevideos.wordpress.com                                                   4.3 Theoretical Genetics                        24
Phenylketonuria (PKU)                                                                                      Clinical example.

A recessive mis-sense mutation in the gene that produces tyrosine hydroxylase means that
phenylalanine cannot be converted to tyrosine in the body - so it builds up.

                                                           Genetics review:
                                                           1. What is a missense mutation?




                                                           2. Is this disorder autosomal or sex-linked?


                                                           3. What is the locus of the tyrosine hydroxlase
                                                           gene?

Chromosome 12 from:
http://commons.wikimedia.org/wiki/File:Chromosome_12.svg




                                                                                         Diagnosis- blood test taken at 6-7 days after birth
                                                              http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/


              http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics                        25
Phenylketonuria (PKU)                                                                                      Clinical example.

A recessive mis-sense mutation in the gene that produces tyrosine hydroxylase means that
phenylalanine cannot be converted to tyrosine in the body - so it builds up.

                                                           Genetics review:
                                                           1. What is a missense mutation?
                                                           It is a base-substitution mutation where the
                                                           change in a single base results in a different
                                                           amino acid being produced in the polypeptide.

                                                           2. Is this disorder autosomal or sex-linked?
                                                           Autosomal – chromosome 12

                                                           3. What is the locus of the tyrosine hydroxlase
                                                           gene?
                                                            12q22 - 24
Chromosome 12 from:
http://commons.wikimedia.org/wiki/File:Chromosome_12.svg




                                                                                         Diagnosis- blood test taken at 6-7 days after birth
                                                              http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/


              http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics                        26
Phenylketonuria (PKU)                                                              Clinical example.

What is the probability of two parents who are both carriers of the recessive allele producing
children affected by PKU?

F0         Phenotype:                    carrier        carrier
                                                                        Key to alleles:
                                                                        T = Normal enzyme
                                                                        t = faulty enzyme
             Genotype:                        Tt        Tt

           Punnet Grid:                   gametes   T    t
                                              T
                                              t
              Genotypes:
  F1         Phenotypes:
       Phenotype ratio:


         http://sciencevideos.wordpress.com                         4.3 Theoretical Genetics           27
Phenylketonuria (PKU)                                                                     Clinical example.

What is the probability of two parents who are both carriers of the recessive allele producing
children affected by PKU?

F0         Phenotype:                    carrier                carrier
                                                                               Key to alleles:
                                                                               T = Normal enzyme
                                                                               t = faulty enzyme
             Genotype:                        Tt                Tt

           Punnet Grid:                   gametes     T          t
                                              T      TT         Tt
                                              t      Tt         tt
              Genotypes:                       TT    Tt    Tt        tt
  F1         Phenotypes:                       Normal enzyme         PKU
                                                                           Therefore 25% chance
       Phenotype ratio:                                        3:1         of a child with PKU

         http://sciencevideos.wordpress.com                                4.3 Theoretical Genetics           28
Pedigree Charts                                                                      Key to alleles:
                                                                                     T= Has enzyme
Pedigree charts can be used to trace family histories and deduce                     t = no enzyme
genotypes and risk in the case of inherited gene-related disorders.
Here is a pedigree chart for this family history.                          Key:       female     male

                                                                         affected

                                                                           Not
                                                                         Affected

                                                                         deceased


                                                                           Looks like



   Deduce the genotypes
    of these individuals:                      A&B                C                      D
     Genotype

       Reason

          http://sciencevideos.wordpress.com                          4.3 Theoretical Genetics          29
Pedigree Charts                                                                                          Key to alleles:
                                                                                                         T= Has enzyme
Pedigree charts can be used to trace family histories and deduce                                         t = no enzyme
genotypes and risk in the case of inherited gene-related disorders.
Here is a pedigree chart for this family history.                                              Key:       female         male

                                                                                             affected

                                                                                               Not
                                                                                             Affected

                                                                                             deceased


                                                                                               Looks like



   Deduce the genotypes
    of these individuals:                      A&B                        C                                  D
     Genotype                                  Both Tt                     tt                                Tt
                                                                                               To have produced affected
                                  Trait is recessive, as both     Recessive traits only
                                                                                               child H, D must have inherited
       Reason                     are normal, yet have produced
                                  an affected child (C)
                                                                  expressed when
                                                                  homozygous.
                                                                                               a recessive allele from either A
                                                                                               or B


          http://sciencevideos.wordpress.com                                              4.3 Theoretical Genetics                30
Pedigree Charts                                                                      Key to alleles:
                                                                                     T= Has enzyme
Individuals D and $ are planning to have another child.                              t = no enzyme
Calculate the chances of the child having PKU.
                                                                           Key:       female     male

                                                                          affected

                                                                            Not
                                                          $               Affected

                                                                          deceased


                                                                            Looks like

  Genotypes:
  D=                              Gametes
                                                              Phenotype ratio

  $=                                                          Therefore




          http://sciencevideos.wordpress.com                          4.3 Theoretical Genetics          31
Pedigree Charts                                                                          Key to alleles:
                                                                                         T= Has enzyme
Individuals D and $ are planning to have another child.                                  t = no enzyme
Calculate the chances of the child having PKU.
                                                                               Key:       female     male

                                                                             affected

                                                                               Not
                                                              $              Affected

                                                                             deceased


                                                                               Looks like

  Genotypes:
  D = Tt (carrier)                Gametes      T          t
                                                                  Phenotype ratio
                                      t        Tt     tt          1 : 1 Normal : PKU
  $ = tt (affected)
                                                                  Therefore 50% chance of a
                                      t        Tt     tt          child with PKU



          http://sciencevideos.wordpress.com                              4.3 Theoretical Genetics          32
Codominance                               Some genes have more than two alleles.
                                          Where alleles are codominant, they are both expressed.

Human ABO blood typing is an example of multiple alleles and codominance.
The gene is for cell-surface antigens (immunoglobulin receptors).
These are either absent (type O) or present.
If they are present, they are either type A, B or both.        Key to alleles:
                                                               i = no antigens present
Where the genotype is heterozygous for IA and IB, both         IA = type A anitgens present
are expressed. This is codominance.                            IB = type B antigens present




     http://sciencevideos.wordpress.com                              4.3 Theoretical Genetics      33
More about blood typing                                                   A Nobel breakthrough in medicine.
Antibodies (immunoglobulins) are specific to antigens.
The immune system recognises 'foreign' antigens and
produces antibodies in response - so if you are given the
wrong blood type your body might react fatally as the
antibodies cause the blood to clot.

Blood type O is known as the universal donor, as it has
not antigens against which the recipient immune system
can react. Type AB is the universal recipient, as it has no
antibodies which will react to AB antigens.




   Blood typing game from Nobel.org:                                                             Images and more information from:
   http://nobelprize.org/educational/medicine/landsteiner/readmore.html   http://learn.genetics.utah.edu/content/begin/traits/blood/

         http://sciencevideos.wordpress.com                                             4.3 Theoretical Genetics                       34
Sickle Cell                                   Another example of codominance.

                                                                 Remember the notation used: superscripts
                                                                 represent codominant alleles.
                                                                 In codominance, heterozygous individuals have a
                                                                 mixed phenotype.
 The mixed phenotype gives protection against malaria, but does not exhibit full-blown sickle cell anemia.

 Complete the table for these individuals:

          Genotype


         Description            Homozygous HbA               Heterozygous            Homozygous HbS


          Phenotype


           Malaria
         protection?


         http://sciencevideos.wordpress.com                                          4.3 Theoretical Genetics      35
Sickle Cell                                   Another example of codominance.

                                                                 Remember the notation used: superscripts
                                                                 represent codominant alleles.
                                                                 In codominance, heterozygous individuals have a
                                                                 mixed phenotype.
 The mixed phenotype gives protection against malaria, but does not exhibit full-blown sickle cell anemia.

 Complete the table for these individuals:

          Genotype                     HbA HbA                  HbA HbS                    HbS HbS


         Description            Homozygous HbA               Heterozygous            Homozygous HbS


          Phenotype                     normal                   carrier            Sickle cell disease


           Malaria
                                              No                  Yes                          Yes
         protection?


         http://sciencevideos.wordpress.com                                          4.3 Theoretical Genetics      36
Sickle Cell                                Another example of codominance.           Key to alleles:
                                                                                     HbA = Normal Hb
                                                                                     HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier                  affected
             Genotype:


           Punnet Grid:               gametes




               Genotypes:
 F1          Phenotypes:
      Phenotype ratio:                                          :              Therefore 50% chance of a
                                                                               child with sickle cell disease.

      http://sciencevideos.wordpress.com                                        4.3 Theoretical Genetics         37
Sickle Cell                                Another example of codominance.             Key to alleles:
                                                                                       HbA = Normal Hb
                                                                                       HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier                 affected
             Genotype:               HbA Hbs                        HbS Hbs

           Punnet Grid:               gametes          HbS             HbS
                                       HbA           HbAHbS HbAHbS
                                       HbS           HbSHbS HbSHbS
               Genotypes:                             HbAHbS & HbSHbS
 F1          Phenotypes:                                 Carrier & Sickle cell

      Phenotype ratio:                                        1:1                Therefore 50% chance of a
                                                                                 child with sickle cell disease.

      http://sciencevideos.wordpress.com                                          4.3 Theoretical Genetics         38
Sickle Cell                                Another example of codominance.        Key to alleles:
                                                                                  HbA = Normal Hb
                                                                                  HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier                 carrier
             Genotype:


           Punnet Grid:               gametes




               Genotypes:
 F1          Phenotypes:
      Phenotype ratio:


      http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics   39
Sickle Cell                                Another example of codominance.           Key to alleles:
                                                                                     HbA = Normal Hb
                                                                                     HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier                  carrier
             Genotype:               HbA HbS                        HbA HbS

           Punnet Grid:               gametes          HbA             HbS
                                       HbA           HbAHbA HbAHbS
                                       HbS           HbAHbS HbSHbS
               Genotypes:                      HbAHb & 2 HbAHbS & HbSHbS
 F1          Phenotypes:                       Unaffected & Carrier & Sickle cell

      Phenotype ratio:                                      1: 2 : 1          Therefore 25% chance of a
                                                                              child with sickle cell disease.

      http://sciencevideos.wordpress.com                                        4.3 Theoretical Genetics        40
Sickle Cell                                Another example of codominance.        Key to alleles:
                                                                                  HbA = Normal Hb
                                                                                  HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier              unknown
             Genotype:               HbA HbS

           Punnet Grid:               gametes


                                       HbA
                                       HbS
               Genotypes:
 F1          Phenotypes:
      Phenotype ratio:


      http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics   41
Sickle Cell                                Another example of codominance.        Key to alleles:
                                                                                  HbA = Normal Hb
                                                                                  HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier              unknown
             Genotype:               HbA HbS                       HbA HbA or HbA HbS

           Punnet Grid:               gametes          HbA          HbA          HbA                    HbS
                                       HbA
                                       HbS
               Genotypes:
 F1          Phenotypes:
      Phenotype ratio:


      http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics         42
Sickle Cell                                Another example of codominance.           Key to alleles:
                                                                                     HbA = Normal Hb
                                                                                     HbS = Sickle cell
 Predict the phenotype ratio in this cross:


 F0         Phenotype:                     carrier               unknown
             Genotype:               HbA HbS                        HbA HbA or HbA HbS

           Punnet Grid:               gametes          HbA           HbA            HbA                    HbS
                                       HbA           HbAHbA        HbAHbA HbAHbA                      HbAHbS

                                       HbS           HbAHbS        HbAHbS        HbAHbS                HbSHbS

               Genotypes:            3 HbAHbA & 4 HbAHbS & 1 HbSHbS
 F1          Phenotypes:                       3 Unaffected & 4 Carrier & 1 Sickle cell

      Phenotype ratio:                                      3:4:1             Therefore 12.5% chance of a
                                                                              child with sickle cell disease.

      http://sciencevideos.wordpress.com                                        4.3 Theoretical Genetics         43
Sex Determination                                                                                 It’s all about X and Y…

                                                                    Humans have 23 pairs of chromosomes in
                                                                    diploid somatic cells (n=2).

                                                                    22 pairs of these are autosomes, which are
                                                                    homologous pairs.

                                                                    One pair is the sex chromosomes.
                                                                    XX gives the female gender, XY gives male.



Karyotype of a human male, showing X and Y chromosomes:
http://en.wikipedia.org/wiki/Karyotype
                                                                                                                                 SRY
                             The X chromosome is much larger than the Y.
                             X carries many genes in the non-homologous
                                        region which are not present on Y.

                                     The presence and expression of the SRY
                                      gene on Y leads to male development.
                                                                 Chromosome images from Wikipedia:
                                                          http://en.wikipedia.org/wiki/Y_chromosome

            http://sciencevideos.wordpress.com                                                        4.3 Theoretical Genetics         44
Sex Determination                                                                   It’s all about X and Y…

                                                       Chromosome pairs segregate in meiosis.

                                                       Females (XX) produce only eggs containing
                                                       the X chromosome.

                                                       Males (XY) produce sperm which can contain
                                                       either X or Y chromosomes.


Segregation of the sex chromosomes in meiosis.

                                                                            SRY gene determines maleness.
         gametes                   X              Y
                                                                            Find out more about its role and
            X                      XX             XY                        just why do men have nipples?

            X                      XX             XY                                              Chromosome images from Wikipedia:
                                                                                           http://en.wikipedia.org/wiki/Y_chromosome

     Therefore there is an even chance*
     of the offspring being male or female.            http://www.hhmi.org/biointeractive/gender/lectures.html


             http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics                       45
Sex Determination                                                Non-disjunction can lead to gender disorders.


XYY Syndrome:                                                      XXY: Klinefelter Syndrome:
Fertile males, with increased risk of learning difficulties.       Males with enhanced female characteristics
Some weak connections made to violent tendencies.

XO: Turner Syndrome
Monosomy of X, leads to short stature, female children.

XXX Syndrome:
Fertile females. Some X-carrying gametes can be produced.




         Interactive from HHMI Biointeractive:                  Image from NCBI:
         http://www.hhmi.org/biointeractive/gender/click.html   http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=mga&part=A1179

        http://sciencevideos.wordpress.com                                         4.3 Theoretical Genetics                    46
Sex Linkage                                                    X and Y chromosomes are non-homologous.

The sex chromosomes are non-homologous.
There are many genes on the X-chromosome                               Non-homologous
which are not present on the Y-chromosome.                                     region

Sex-linked traits are those which are carried on
the X-chromosome in the non-homologous
region. They are more common in males.




                                                                       Non-homologous
                                                                               region



                                                 Examples of sex-linked genetic disorders:
                                                 - haemophilia
                                                 - colour blindness
X and Y SEM from                                                                        Chromosome images from Wikipedia:
http://www.angleseybonesetters.co.uk/bones_DNA.html                              http://en.wikipedia.org/wiki/Y_chromosome

           http://sciencevideos.wordpress.com                               4.3 Theoretical Genetics                   47
Sex Linkage                                X and Y chromosomes are non-homologous.

What number do you see?




                                                                    Chromosome images from Wikipedia:
                                                             http://en.wikipedia.org/wiki/Y_chromosome

      http://sciencevideos.wordpress.com                4.3 Theoretical Genetics                   48
Sex Linkage                                            X and Y chromosomes are non-homologous.

What number do you see?

                          5 = normal vision
                          2 = red/green colour blindness




                                                                                Chromosome images from Wikipedia:
                                                                         http://en.wikipedia.org/wiki/Y_chromosome

      http://sciencevideos.wordpress.com                            4.3 Theoretical Genetics                   49
Sex Linkage                                                  X and Y chromosomes are non-homologous.

How is colour-blindness inherited?

                           The red-green gene is carried at locus Xq28.
                           This locus is in the non-homologous region, so
                           there is no corresponding gene (or allele) on the
                           Y chromosome.

                           Normal vision is dominant over colour-blindness.


 XN       XN
 Normal female
                                  XN        Y
                                   Normal male
                                                   no allele carried, none written

                                                     Key to alleles:
  n        n                       n                 N = normal vision                               Xq28
 X        X
 Affected female
                                  X         Y
                                 Affected male
                                                     n = red/green colour
                                                        blindness


  N         n              Human females can be homozygous or
 X         X
 Carrier female
                           heterozygous with respect to sex-linked genes.
                           Heterozygous females are carriers.                Chromosome images from Wikipedia:
                                                                      http://en.wikipedia.org/wiki/Y_chromosome

       http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics       50
Sex Linkage                                          X and Y chromosomes are non-homologous.

What chance of a colour-blind child in the cross between a         Key to alleles:
normal male and a carrier mother?                                  N = normal vision
                                                                   n = red/green colour
F0        Genotype:             XN          Xn       XN      Y
                                                                      blindness


        Phenotype:              Carrier female   X   Normal male

      Punnet Grid:




 F1


                                                                               Chromosome images from Wikipedia:
                                                                        http://en.wikipedia.org/wiki/Y_chromosome

       http://sciencevideos.wordpress.com                          4.3 Theoretical Genetics                   51
Sex Linkage                                            X and Y chromosomes are non-homologous.

What chance of a colour-blind child in the cross between a          Key to alleles:
normal male and a carrier mother?                                   N = normal vision
                                                                    n = red/green colour
F0        Genotype:             XN          Xn        XN      Y
                                                                       blindness


        Phenotype:              Carrier female    X   Normal male

      Punnet Grid:
                                   XN    Y
                               XN XN XN XN Y
 F1
                                Xn          XN   Xn   Xn Y

                                                                                Chromosome images from Wikipedia:
                                                                         http://en.wikipedia.org/wiki/Y_chromosome

       http://sciencevideos.wordpress.com                           4.3 Theoretical Genetics                   52
Sex Linkage                                                     X and Y chromosomes are non-homologous.

 What chance of a colour-blind child in the cross between a                   Key to alleles:
 normal male and a carrier mother?                                            N = normal vision
                                                                              n = red/green colour
 F0        Genotype:             XN          Xn                 XN      Y
                                                                                  blindness


         Phenotype:              Carrier female         X       Normal male

       Punnet Grid:
                                    XN    Y
                                XN XN XN XN Y
                                             Normal female    Normal male
  F1
                                 Xn          XN      Xn
                                             Carrier female
                                                              Xn Y
                                                              Affected male
                                                                              There is a 1 in 4 (25%)
                                                                              chance of an affected child.

What ratios would we expect in a cross between:
a. a colour-blind male and a homozygous normal female?                                     Chromosome images from Wikipedia:
b. a normal male and a colour-blind female?                                         http://en.wikipedia.org/wiki/Y_chromosome

        http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics                   53
Red-Green Colour Blindness                                                          How does it work?

     The OPN1MW and OPN1LW genes are found at locus Xq28.

                                           They are responsible for producing
                                           photoreceptive pigments in the cone
                                           cells in the eye. If one of these genes is
                                           a mutant, the pigments are not
                                           produced properly and the eye cannot
                                           distinguish between green (medium)
                                           wavelengths and red (long)
                                           wavelengths in the visible spectrum.




Because the Xq28 gene is in a non-homologous region when compared
                                                                                             Xq28
to the Y chromosome, red-green colour blindness is known as a sex-
linked disorder. The male has no allele on the Y chromosome to
combat a recessive faulty allele on the X chromosome.


                                                                                 Chromosome images from Wikipedia:
                                                                          http://en.wikipedia.org/wiki/Y_chromosome

      http://sciencevideos.wordpress.com                             4.3 Theoretical Genetics                   54
Colour Blind cartoon from:
http://www.almeidacartoons.com/Med_toons1.html


http://sciencevideos.wordpress.com               4.3 Theoretical Genetics   55
Hemophilia                                                            Another sex-linked disorder.

Blood clotting is an example of a metabolic pathway –
a series of enzyme-controlled biochemical reactions.

It requires globular proteins called clotting factors.
A recessive X-linked mutation in hemophiliacs results in one of these
factors not being produced. Therefore, the clotting response to
injury does not work and the patient can bleed to death.


XH        XH
Normal female
                                  XH        Y
                                   Normal male
                                                  no allele carried, none written

                                                    Key to alleles:
                                                    XH = healthy clotting factors
 Xh Xh
 Affected female
                                  Xh Y
                                 Affected male
                                                    Xh = no clotting factor


                                     Human females can be homozygous or
 XH        Xh
 Carrier female
                                     heterozygous with respect to sex-linked genes.
                                     Heterozygous females are carriers.
                                                                                       Chromosome images from Wikipedia:
                                                                                http://en.wikipedia.org/wiki/Y_chromosome

       http://sciencevideos.wordpress.com                                  4.3 Theoretical Genetics                   56
Hemophilia                             results from a lack of clotting factors. These are globular
                                       proteins, which act as enzymes in the clotting pathway.



                                       Read/ research/ review:

                                       How can gene transfer be used to treat
                                       hemophiliacs?

                                       What is the relevance of “the genetic code
                                       is universal” in this process?




                                                                                      Chromosome images from Wikipedia:
                                                                               http://en.wikipedia.org/wiki/Y_chromosome

  http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics                   57
Hemophilia                             results from a lack of clotting factors. These are globular
                                       proteins, which act as enzymes in the clotting pathway.




                                                                                      Chromosome images from Wikipedia:
                                                                               http://en.wikipedia.org/wiki/Y_chromosome

  http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics                   58
Hemophilia                                       This pedigree chart of the English Royal Family gives us a
                                                 picture of the inheritance of this X-linked disorder.




Royal Family Pedigree Chart from:
http://www.sciencecases.org/hemo/hemo.asp




            http://sciencevideos.wordpress.com                                     4.3 Theoretical Genetics   59
Hemophilia                                                                Pedigree chart practice

                                                 State the genotypes of the following family members:
                                                 1. Leopold


                                                 2. Alice



                                                 3. Bob was killed in a tragic croquet accident before
                                                    his phenotype was determined.



                                                                                    Key:       female     male
                                                 4. Britney
                                                                                  affected
Key to alleles:
                                                                                    Not
H = healthy clotting factors                                                      Affected
h = no clotting factor
                                                                                  deceased
     Royal Family Pedigree Chart from:
     http://www.sciencecases.org/hemo/hemo.asp

          http://sciencevideos.wordpress.com                                   4.3 Theoretical Genetics          60
Hemophilia                                                                Pedigree chart practice

                                                 State the genotypes of the following family members:
                                                 1. Leopold
                                                            Xh Y
                                                 2. Alice



                                                 3. Bob was killed in a tragic croquet accident before
                                                    his phenotype was determined.



                                                                                    Key:       female     male
                                                 4. Britney
                                                                                  affected
Key to alleles:
                                                                                    Not
H = healthy clotting factors                                                      Affected
h = no clotting factor
                                                                                  deceased
     Royal Family Pedigree Chart from:
     http://www.sciencecases.org/hemo/hemo.asp

          http://sciencevideos.wordpress.com                                   4.3 Theoretical Genetics          61
Hemophilia                                                                Pedigree chart practice

                                                 State the genotypes of the following family members:
                                                 1. Leopold
                                                            Xh Y
                                                 2. Alice
                                                            XH Xh

                                                 3. Bob was killed in a tragic croquet accident before
                                                    his phenotype was determined.



                                                                                    Key:       female     male
                                                 4. Britney
                                                                                  affected
Key to alleles:
                                                                                    Not
H = healthy clotting factors                                                      Affected
h = no clotting factor
                                                                                  deceased
     Royal Family Pedigree Chart from:
     http://www.sciencecases.org/hemo/hemo.asp

          http://sciencevideos.wordpress.com                                   4.3 Theoretical Genetics          62
Hemophilia                                                                Pedigree chart practice

                                                 State the genotypes of the following family members:
                                                 1. Leopold
                                                            Xh Y
                                                 2. Alice
                                                            XH Xh

                                                 3. Bob was killed in a tragic croquet accident before
                                                    his phenotype was determined.
                                                        XH Y or Xh Y
                                                                                    Key:       female     male
                                                 4. Britney
                                                                                  affected
Key to alleles:
                                                                                    Not
H = healthy clotting factors                                                      Affected
h = no clotting factor
                                                                                  deceased
     Royal Family Pedigree Chart from:
     http://www.sciencecases.org/hemo/hemo.asp

          http://sciencevideos.wordpress.com                                   4.3 Theoretical Genetics          63
Hemophilia                                                                Pedigree chart practice

                                                 State the genotypes of the following family members:
                                                 1. Leopold
                                                            Xh Y
                                                 2. Alice
                                                            XH Xh

                                                 3. Bob was killed in a tragic croquet accident before
                                                    his phenotype was determined.
                                                        XH Y or Xh Y
                                                                                    Key:       female     male
                                                 4. Britney
                                                        XH XH or XH Xh            affected
Key to alleles:
                                                                                    Not
H = healthy clotting factors                                                      Affected
h = no clotting factor
                                                                                  deceased
     Royal Family Pedigree Chart from:
     http://www.sciencecases.org/hemo/hemo.asp

          http://sciencevideos.wordpress.com                                   4.3 Theoretical Genetics          64
Pedigree Chart Practice
                                                              Key:       female       male

                                                            affected

                                                             Not
                                                           Affected

                                                            deceased




Dominant or Recessive?                     Autosomal or Sex-linked?




      http://sciencevideos.wordpress.com                   4.3 Theoretical Genetics          65
Pedigree Chart Practice
                                                                     Key:       female       male

                                                                   affected

                                                                    Not
                                                                  Affected

                                                                   deceased




Dominant or Recessive?                            Autosomal or Sex-linked?
Dominant.
A and B are both affected but have produced
unaffected (D & F). Therefore A and B must have
been carrying recessive healthy alleles.

If it were recessive, it would need to be
homozygous to be expressed in A & B – and then
all offspring would be homozygous recessive.



        http://sciencevideos.wordpress.com                        4.3 Theoretical Genetics          66
Pedigree Chart Practice
                                                                        Key:       female       male

                                                                      affected

                                                                        Not
                                                                      Affected

                                                                      deceased




Dominant or Recessive?                            Autosomal or Sex-linked?
Dominant.                                         Autosomal.
A and B are both affected but have produced       Male C can only pass on one X chromosome. If it
unaffected (D & F). Therefore A and B must have   were carried on X, daughter H would be affected
been carrying recessive healthy alleles.          by the dominant allele.

If it were recessive, it would need to be         Tip: Don’t get hung up on the number of
homozygous to be expressed in A & B – and then    individuals with each phenotype – each
all offspring would be homozygous recessive.      reproductive event is a matter of chance. Instead
                                                  focus on possible and impossible genotypes.
                                                  Draw out the punnet grids if needed.

        http://sciencevideos.wordpress.com                           4.3 Theoretical Genetics          67
Super Evil Past Paper Question
                                              In this pedigree chart for hemophilia, what is
                                              the chance that offspring ? will be affected?
                                                A. 0%
                                                B. 12.5%
                                                C. 25%
                                                D. 50%


  Key:        female           male

 affected

   Not
 Affected

 deceased




         http://sciencevideos.wordpress.com                      4.3 Theoretical Genetics      68
Super Evil Past Paper Question
                                              In this pedigree chart for hemophilia, what is
                                              the chance that offspring ? will be affected?
                                                A. 0%
                                                                 Key to alleles:
                                                B. 12.5%         XH = healthy clotting factors
                                                                 Xh = no clotting factor
                                                C. 25%
                                                D. 50%


  Key:        female           male

 affected

   Not
 Affected

 deceased




         http://sciencevideos.wordpress.com                     4.3 Theoretical Genetics         69
Super Evil Past Paper Question
                                                           In this pedigree chart for hemophilia, what is
                                                           the chance that offspring ? will be affected?
                                                              A. 0%
                                                                              Key to alleles:
                                                              B. 12.5%        XH = healthy clotting factors
                                                                              Xh = no clotting factor
                                                              C. 25%
                                                              D. 50%
                                              What do we know?
                                              A = XH Y B = XH Xh (because G = Xh Y) E = XH Y
  Key:        female           male

 affected

   Not
 Affected
                                                XH
 deceased
                                                 Y



         http://sciencevideos.wordpress.com                                  4.3 Theoretical Genetics         70
Super Evil Past Paper Question
                                                               In this pedigree chart for hemophilia, what is
                                                               the chance that offspring ? will be affected?
                                                                 A. 0%
                                                                                  Key to alleles:
                                                                 B. 12.5%         XH = healthy clotting factors
                                                                                  Xh = no clotting factor
                                                                 C. 25%
                                                                 D. 50%
                                              What do we know?
                                              A = XH Y B = XH Xh (because G = Xh Y) E = XH Y
  Key:        female           male           There is an equal chance of F being XH XH or XH Xh
                                              So:
 affected

   Not                                                    XH             XH        XH                Xh
 Affected
                                                 XH
 deceased
                                                 Y



         http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics         71
Super Evil Past Paper Question
                                                               In this pedigree chart for hemophilia, what is
                                                               the chance that offspring ? will be affected?
                                                                 A. 0%
                                                                                  Key to alleles:
                                                                 B. 12.5%         XH = healthy clotting factors
                                                                                  Xh = no clotting factor
                                                                 C. 25%
                                                                 D. 50%
                                              What do we know?
                                              A = XH Y B = XH Xh (because G = Xh Y) E = XH Y
  Key:        female           male           There is an equal chance of F being XH XH or XH Xh
                                              So:
 affected

   Not                                                    XH             XH        XH                Xh
 Affected
                                                 XH     XH XH         XH XH       XH XH            XH Xh
 deceased
                                                 Y       XH Y         XH Y        XH Y              Xh Y



         http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics         72
Super Evil Past Paper Question
                                                               In this pedigree chart for hemophilia, what is
                                                               the chance that offspring ? will be affected?
                                                                 A. 0%
                                                                                  Key to alleles:
                                                                 B. 12.5%         XH = healthy clotting factors
                                                                                  Xh = no clotting factor
                                                                 C. 25%
                                                                 D. 50%
                                              What do we know?
                                              A = XH Y B = XH Xh (because G = Xh Y) E = XH Y
  Key:        female           male           There is an equal chance of F being XH XH or XH Xh
                                              So:
 affected

   Not                                                    XH             XH        XH                Xh
 Affected
                                                 XH     XH XH         XH XH       XH XH            XH Xh
 deceased
                                                 Y       XH Y         XH Y        XH Y              Xh Y

                            So there is a 1 in 8 (12.5%) chance of the offspring being affected!

         http://sciencevideos.wordpress.com                                      4.3 Theoretical Genetics         73
Whirling Gene activity from the awesome Learn.Genetics site:
http://learn.genetics.utah.edu/archive/pedigree/mapgene.html


              http://sciencevideos.wordpress.com               4.3 Theoretical Genetics   74
For more IB Biology resources:
                          http://sciencevideos.wordpress.com
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                                                                                                    4.3 Theoretical Genetics   75

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Theoretical Genetics

  • 1. Theoretical Genetics Stephen Taylor http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 1
  • 2. Definitions This image shows a pair of homologous chromosomes. Name and annotate the labeled features. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 2
  • 3. Definitions This image shows a pair of homologous chromosomes. Name and annotate the labeled features. Genotype The combination of alleles Homozygous dominant of a gene carried by an organism Having two copies of the same dominant allele Phenotype The expression of alleles Homozygous recessive of a gene carried by an organism Having two copies of the same recessive allele. Recessive alleles are Centromere only expressed when homozygous. Joins chromatids in cell division Codominant Alleles Pairs of alleles which are both Different versions of a gene expressed when present. Dominant alleles = capital letter Recessive alleles = lower-case letter Heterozygous Having two different alleles. The dominant allele is expressed. Carrier Gene loci Heterozygous carrier of a Specific positions of genes on a recessive disease-causing allele chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 3
  • 4. Making Babies 1. Count the chromosomes in your envelope - there should be 46 in total. 2. Shuffle the chromosomes, so that they are well mixed up. Which aspects of meiosis and sexual reproduction give genetic variation? • Crossing-over in prophase I • Random orientation in metaphase I and II • Random fertilisation 3. Now arrange them in a karyotype (don't turn them over - leave them as they were). Activity from: http://www.nclark.net/Genetics 4. What is the gender of your baby? Explain how gender is inherited in humans. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 4
  • 5. Making Babies • Crossing-over in prophase I • Random orientation in metaphase I and II • Random fertilisation List all the traits in a table. Use the key above to determine the genotypes and phenotypes of your offspring. Draw a picture of your beautiful child’s face! HL identify traits which are polygenic, involve gene interactions and some which are linked. Activity from: http://www.nclark.net/Genetics http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 5
  • 6. Explain this Mendel crossed some yellow peas with some yellow peas. Most offspring were yellow but some were green! Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 6
  • 7. Segregation “alleles of each gene separate into different gametes when the individual produces gametes” The yellow parent peas must Mendel did not know about be heterozygous. The yellow DNA, chromosomes or meiosis. phenotype is expressed. Through his experiments he did Through meiosis and work out that ‘heritable factors’ fertilisation, some offspring (genes) were passed on and peas are homozygous that these could have different recessive – they express a versions (alleles). green colour. Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 7
  • 8. Segregation “alleles of each gene separate into different gametes when the individual produces gametes” F0 Genotype: Yy Yy Alleles segregate during meiosis (anaphase I) and end up in different haploid gametes. Gametes: Y or y Y or y Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 8
  • 9. Monohybrid Cross Crossing a single trait. F0 Genotype: Yy Yy Alleles segregate during meiosis (anaphase I) and end up in different haploid gametes. Gametes: Y or y Y or y Fertilisation results in diploid Punnet Grid: gametes zygotes. A punnet grid can be used to deduce the potential outcomes of the cross and to calculate the expected ratio of phenotypes in the next generation (F1). Genotypes: F1 Phenotypes: Phenotype ratio: Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 9
  • 10. Monohybrid Cross Crossing a single trait. F0 Genotype: Yy Yy Alleles segregate during meiosis (anaphase I) and end up in different haploid gametes. Gametes: Y or y Y or y Fertilisation results in diploid Punnet Grid: gametes Y y zygotes. A punnet grid can be used to Y YY Yy deduce the potential outcomes of the cross and to calculate the y Yy yy expected ratio of phenotypes in the next generation (F1). Genotypes: F1 Phenotypes: Phenotype ratio: Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 10
  • 11. Monohybrid Cross Crossing a single trait. F0 Genotype: Yy Yy Alleles segregate during meiosis (anaphase I) and end up in different haploid gametes. Gametes: Y or y Y or y Fertilisation results in diploid Punnet Grid: gametes Y y zygotes. A punnet grid can be used to Y YY Yy deduce the potential outcomes of the cross and to calculate the y Yy yy expected ratio of phenotypes in the next generation (F1). Genotypes: YY Yy Yy yy Ratios are written in the F1 Phenotypes: simplest mathematical form. Phenotype ratio: 3:1 Mendel from: http://history.nih.gov/exhibits/nirenberg/popup_htm/01_mendel.htm http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 11
  • 12. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: Homozygous recessive Homozygous recessive Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 12
  • 13. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: yy yy Homozygous recessive Homozygous recessive Punnet Grid: gametes y y y yy yy y yy yy Genotypes: yy yy yy yy F1 Phenotypes: Phenotype ratio: All green http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 13
  • 14. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: Homozygous recessive Heterozygous Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 14
  • 15. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: yy Yy Homozygous recessive Heterozygous Punnet Grid: gametes Y y y Yy yy y Yy yy Genotypes: Yy Yy yy yy F1 Phenotypes: Phenotype ratio: 1:1 http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 15
  • 16. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: Homozygous dominant Heterozygous Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 16
  • 17. Monohybrid Cross What is the expected ratio of phenotypes in this monohybrid cross? F0 Phenotype: Key to alleles: Y = yellow y = green Genotype: YY Yy Homozygous dominant Heterozygous Punnet Grid: gametes Y y Y YY Yy Y YY Yy Genotypes: YY YY Yy Yy F1 Phenotypes: Phenotype ratio: All yellow http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 17
  • 18. Test Cross Used to determine the genotype of an unknown individual. The unknown is crossed with a known homozygous recessive. F0 Phenotype: Key to alleles: R = Red flower r = white Genotype: R? r r unknown Homozygous recessive Possible outcomes: F1 Phenotypes: Unknown parent = RR Unknown parent = Rr gametes gametes http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 18
  • 19. Test Cross Used to determine the genotype of an unknown individual. The unknown is crossed with a known homozygous recessive. F0 Phenotype: Key to alleles: R = Red flower r = white Genotype: R? r r unknown Homozygous recessive Possible outcomes: F1 Phenotypes: All red Some white, some red Unknown parent = RR Unknown parent = Rr gametes r r gametes r r R Rr Rr R Rr Rr R Rr Rr r rr rr http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 19
  • 20. Career-related Case Study “According to the US Bureau of Labor Statistics, the graduate of today will change career four to six times in a lifetime. By one estimate, 65 per cent of the jobs that will be available upon college graduation for students now entering high school (that's eight years from now) do not yet exist. Consider the new interdisciplinary field of genetic counselling, which combines biological science with social work and ethics - it was ranked as one of the "top 10" career choices of 2010 because it offered far more openings than could be filled by qualified applicants.” From the Times Higher Education Supplement – “So Last Century” http://www.timeshighereducation.co.uk/story.asp?sectioncode=26&storycode=415941&c=2 http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 20
  • 21. Career-related Case Study “According to the US Bureau of Labor Statistics, the graduate of today will change career four to six times in a lifetime. By one estimate, 65 per cent of the jobs that will be available upon college graduation for students now entering high school (that's eight years from now) do not yet exist. Consider the new interdisciplinary field of genetic counselling, which combines biological science with social work and ethics - it was ranked as one of the "top 10" career choices of 2010 because it offered far more openings than could be filled by qualified applicants.” From the Times Higher Education Supplement – “So Last Century” http://www.timeshighereducation.co.uk/story.asp?sectioncode=26&storycode=415941&c=2 You are a genetic counselor. A couple walk into your clinic and are concerned about their pregnancy. They each have one parent who is affected by phenylketonuria (PKU) and one parent who has no family history. Explain PKU and its inheritance to them. Deduce the chance of having a child with PKU and how it can be tested and treated. Use the following tools in your explanations: • Pedigree chart • Punnet grid • Diagrams http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 21
  • 22. Phenylketonuria (PKU) Clinical example. Pedigree charts can be used to trace family histories and deduce genotypes and risk in the case of inherited gene-related disorders. Here is a pedigree chart for this family history. key female male I affected Not II Affected A B deceased III ? Is PKU dominant or recessive? How do you know? • • http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 22
  • 23. Phenylketonuria (PKU) Clinical example. Pedigree charts can be used to trace family histories and deduce genotypes and risk in the case of inherited gene-related disorders. Here is a pedigree chart for this family history. key female male I affected Not II Affected A B deceased III ? Is PKU dominant or recessive? How do you know? • Recessive • Unaffected mother in Gen I has produced affected II A. Mother must have been a carrier. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 23
  • 24. Phenylketonuria (PKU) Clinical example. A mis-sense mutation in the gene that produces tyrosine hydroxylase means that phenylalanine cannot be converted to tyrosine in the body - so it builds up. This results in brain developmental problems and seizures. It is progressive, so it must be diagnosed and treated early. Dairy, breastmilk, meat, nuts and aspartame must be avoided, as they are rich in phenylalanine. Diagnosis- blood test taken at 6-7 days after birth The Boy with PKU ideo clip from: http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/ http://www.youtube.com/watch?v=KUJVujhHxPQ http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 24
  • 25. Phenylketonuria (PKU) Clinical example. A recessive mis-sense mutation in the gene that produces tyrosine hydroxylase means that phenylalanine cannot be converted to tyrosine in the body - so it builds up. Genetics review: 1. What is a missense mutation? 2. Is this disorder autosomal or sex-linked? 3. What is the locus of the tyrosine hydroxlase gene? Chromosome 12 from: http://commons.wikimedia.org/wiki/File:Chromosome_12.svg Diagnosis- blood test taken at 6-7 days after birth http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/ http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 25
  • 26. Phenylketonuria (PKU) Clinical example. A recessive mis-sense mutation in the gene that produces tyrosine hydroxylase means that phenylalanine cannot be converted to tyrosine in the body - so it builds up. Genetics review: 1. What is a missense mutation? It is a base-substitution mutation where the change in a single base results in a different amino acid being produced in the polypeptide. 2. Is this disorder autosomal or sex-linked? Autosomal – chromosome 12 3. What is the locus of the tyrosine hydroxlase gene? 12q22 - 24 Chromosome 12 from: http://commons.wikimedia.org/wiki/File:Chromosome_12.svg Diagnosis- blood test taken at 6-7 days after birth http://www.flickr.com/photos/ozewiezewozewiezewallakristallix/2632833781/ http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 26
  • 27. Phenylketonuria (PKU) Clinical example. What is the probability of two parents who are both carriers of the recessive allele producing children affected by PKU? F0 Phenotype: carrier carrier Key to alleles: T = Normal enzyme t = faulty enzyme Genotype: Tt Tt Punnet Grid: gametes T t T t Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 27
  • 28. Phenylketonuria (PKU) Clinical example. What is the probability of two parents who are both carriers of the recessive allele producing children affected by PKU? F0 Phenotype: carrier carrier Key to alleles: T = Normal enzyme t = faulty enzyme Genotype: Tt Tt Punnet Grid: gametes T t T TT Tt t Tt tt Genotypes: TT Tt Tt tt F1 Phenotypes: Normal enzyme PKU Therefore 25% chance Phenotype ratio: 3:1 of a child with PKU http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 28
  • 29. Pedigree Charts Key to alleles: T= Has enzyme Pedigree charts can be used to trace family histories and deduce t = no enzyme genotypes and risk in the case of inherited gene-related disorders. Here is a pedigree chart for this family history. Key: female male affected Not Affected deceased Looks like Deduce the genotypes of these individuals: A&B C D Genotype Reason http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 29
  • 30. Pedigree Charts Key to alleles: T= Has enzyme Pedigree charts can be used to trace family histories and deduce t = no enzyme genotypes and risk in the case of inherited gene-related disorders. Here is a pedigree chart for this family history. Key: female male affected Not Affected deceased Looks like Deduce the genotypes of these individuals: A&B C D Genotype Both Tt tt Tt To have produced affected Trait is recessive, as both Recessive traits only child H, D must have inherited Reason are normal, yet have produced an affected child (C) expressed when homozygous. a recessive allele from either A or B http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 30
  • 31. Pedigree Charts Key to alleles: T= Has enzyme Individuals D and $ are planning to have another child. t = no enzyme Calculate the chances of the child having PKU. Key: female male affected Not $ Affected deceased Looks like Genotypes: D= Gametes Phenotype ratio $= Therefore http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 31
  • 32. Pedigree Charts Key to alleles: T= Has enzyme Individuals D and $ are planning to have another child. t = no enzyme Calculate the chances of the child having PKU. Key: female male affected Not $ Affected deceased Looks like Genotypes: D = Tt (carrier) Gametes T t Phenotype ratio t Tt tt 1 : 1 Normal : PKU $ = tt (affected) Therefore 50% chance of a t Tt tt child with PKU http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 32
  • 33. Codominance Some genes have more than two alleles. Where alleles are codominant, they are both expressed. Human ABO blood typing is an example of multiple alleles and codominance. The gene is for cell-surface antigens (immunoglobulin receptors). These are either absent (type O) or present. If they are present, they are either type A, B or both. Key to alleles: i = no antigens present Where the genotype is heterozygous for IA and IB, both IA = type A anitgens present are expressed. This is codominance. IB = type B antigens present http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 33
  • 34. More about blood typing A Nobel breakthrough in medicine. Antibodies (immunoglobulins) are specific to antigens. The immune system recognises 'foreign' antigens and produces antibodies in response - so if you are given the wrong blood type your body might react fatally as the antibodies cause the blood to clot. Blood type O is known as the universal donor, as it has not antigens against which the recipient immune system can react. Type AB is the universal recipient, as it has no antibodies which will react to AB antigens. Blood typing game from Nobel.org: Images and more information from: http://nobelprize.org/educational/medicine/landsteiner/readmore.html http://learn.genetics.utah.edu/content/begin/traits/blood/ http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 34
  • 35. Sickle Cell Another example of codominance. Remember the notation used: superscripts represent codominant alleles. In codominance, heterozygous individuals have a mixed phenotype. The mixed phenotype gives protection against malaria, but does not exhibit full-blown sickle cell anemia. Complete the table for these individuals: Genotype Description Homozygous HbA Heterozygous Homozygous HbS Phenotype Malaria protection? http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 35
  • 36. Sickle Cell Another example of codominance. Remember the notation used: superscripts represent codominant alleles. In codominance, heterozygous individuals have a mixed phenotype. The mixed phenotype gives protection against malaria, but does not exhibit full-blown sickle cell anemia. Complete the table for these individuals: Genotype HbA HbA HbA HbS HbS HbS Description Homozygous HbA Heterozygous Homozygous HbS Phenotype normal carrier Sickle cell disease Malaria No Yes Yes protection? http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 36
  • 37. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier affected Genotype: Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: : Therefore 50% chance of a child with sickle cell disease. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 37
  • 38. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier affected Genotype: HbA Hbs HbS Hbs Punnet Grid: gametes HbS HbS HbA HbAHbS HbAHbS HbS HbSHbS HbSHbS Genotypes: HbAHbS & HbSHbS F1 Phenotypes: Carrier & Sickle cell Phenotype ratio: 1:1 Therefore 50% chance of a child with sickle cell disease. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 38
  • 39. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier carrier Genotype: Punnet Grid: gametes Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 39
  • 40. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier carrier Genotype: HbA HbS HbA HbS Punnet Grid: gametes HbA HbS HbA HbAHbA HbAHbS HbS HbAHbS HbSHbS Genotypes: HbAHb & 2 HbAHbS & HbSHbS F1 Phenotypes: Unaffected & Carrier & Sickle cell Phenotype ratio: 1: 2 : 1 Therefore 25% chance of a child with sickle cell disease. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 40
  • 41. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier unknown Genotype: HbA HbS Punnet Grid: gametes HbA HbS Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 41
  • 42. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier unknown Genotype: HbA HbS HbA HbA or HbA HbS Punnet Grid: gametes HbA HbA HbA HbS HbA HbS Genotypes: F1 Phenotypes: Phenotype ratio: http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 42
  • 43. Sickle Cell Another example of codominance. Key to alleles: HbA = Normal Hb HbS = Sickle cell Predict the phenotype ratio in this cross: F0 Phenotype: carrier unknown Genotype: HbA HbS HbA HbA or HbA HbS Punnet Grid: gametes HbA HbA HbA HbS HbA HbAHbA HbAHbA HbAHbA HbAHbS HbS HbAHbS HbAHbS HbAHbS HbSHbS Genotypes: 3 HbAHbA & 4 HbAHbS & 1 HbSHbS F1 Phenotypes: 3 Unaffected & 4 Carrier & 1 Sickle cell Phenotype ratio: 3:4:1 Therefore 12.5% chance of a child with sickle cell disease. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 43
  • 44. Sex Determination It’s all about X and Y… Humans have 23 pairs of chromosomes in diploid somatic cells (n=2). 22 pairs of these are autosomes, which are homologous pairs. One pair is the sex chromosomes. XX gives the female gender, XY gives male. Karyotype of a human male, showing X and Y chromosomes: http://en.wikipedia.org/wiki/Karyotype SRY The X chromosome is much larger than the Y. X carries many genes in the non-homologous region which are not present on Y. The presence and expression of the SRY gene on Y leads to male development. Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 44
  • 45. Sex Determination It’s all about X and Y… Chromosome pairs segregate in meiosis. Females (XX) produce only eggs containing the X chromosome. Males (XY) produce sperm which can contain either X or Y chromosomes. Segregation of the sex chromosomes in meiosis. SRY gene determines maleness. gametes X Y Find out more about its role and X XX XY just why do men have nipples? X XX XY Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome Therefore there is an even chance* of the offspring being male or female. http://www.hhmi.org/biointeractive/gender/lectures.html http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 45
  • 46. Sex Determination Non-disjunction can lead to gender disorders. XYY Syndrome: XXY: Klinefelter Syndrome: Fertile males, with increased risk of learning difficulties. Males with enhanced female characteristics Some weak connections made to violent tendencies. XO: Turner Syndrome Monosomy of X, leads to short stature, female children. XXX Syndrome: Fertile females. Some X-carrying gametes can be produced. Interactive from HHMI Biointeractive: Image from NCBI: http://www.hhmi.org/biointeractive/gender/click.html http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=mga&part=A1179 http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 46
  • 47. Sex Linkage X and Y chromosomes are non-homologous. The sex chromosomes are non-homologous. There are many genes on the X-chromosome Non-homologous which are not present on the Y-chromosome. region Sex-linked traits are those which are carried on the X-chromosome in the non-homologous region. They are more common in males. Non-homologous region Examples of sex-linked genetic disorders: - haemophilia - colour blindness X and Y SEM from Chromosome images from Wikipedia: http://www.angleseybonesetters.co.uk/bones_DNA.html http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 47
  • 48. Sex Linkage X and Y chromosomes are non-homologous. What number do you see? Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 48
  • 49. Sex Linkage X and Y chromosomes are non-homologous. What number do you see? 5 = normal vision 2 = red/green colour blindness Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 49
  • 50. Sex Linkage X and Y chromosomes are non-homologous. How is colour-blindness inherited? The red-green gene is carried at locus Xq28. This locus is in the non-homologous region, so there is no corresponding gene (or allele) on the Y chromosome. Normal vision is dominant over colour-blindness. XN XN Normal female XN Y Normal male no allele carried, none written Key to alleles: n n n N = normal vision Xq28 X X Affected female X Y Affected male n = red/green colour blindness N n Human females can be homozygous or X X Carrier female heterozygous with respect to sex-linked genes. Heterozygous females are carriers. Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 50
  • 51. Sex Linkage X and Y chromosomes are non-homologous. What chance of a colour-blind child in the cross between a Key to alleles: normal male and a carrier mother? N = normal vision n = red/green colour F0 Genotype: XN Xn XN Y blindness Phenotype: Carrier female X Normal male Punnet Grid: F1 Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 51
  • 52. Sex Linkage X and Y chromosomes are non-homologous. What chance of a colour-blind child in the cross between a Key to alleles: normal male and a carrier mother? N = normal vision n = red/green colour F0 Genotype: XN Xn XN Y blindness Phenotype: Carrier female X Normal male Punnet Grid: XN Y XN XN XN XN Y F1 Xn XN Xn Xn Y Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 52
  • 53. Sex Linkage X and Y chromosomes are non-homologous. What chance of a colour-blind child in the cross between a Key to alleles: normal male and a carrier mother? N = normal vision n = red/green colour F0 Genotype: XN Xn XN Y blindness Phenotype: Carrier female X Normal male Punnet Grid: XN Y XN XN XN XN Y Normal female Normal male F1 Xn XN Xn Carrier female Xn Y Affected male There is a 1 in 4 (25%) chance of an affected child. What ratios would we expect in a cross between: a. a colour-blind male and a homozygous normal female? Chromosome images from Wikipedia: b. a normal male and a colour-blind female? http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 53
  • 54. Red-Green Colour Blindness How does it work? The OPN1MW and OPN1LW genes are found at locus Xq28. They are responsible for producing photoreceptive pigments in the cone cells in the eye. If one of these genes is a mutant, the pigments are not produced properly and the eye cannot distinguish between green (medium) wavelengths and red (long) wavelengths in the visible spectrum. Because the Xq28 gene is in a non-homologous region when compared Xq28 to the Y chromosome, red-green colour blindness is known as a sex- linked disorder. The male has no allele on the Y chromosome to combat a recessive faulty allele on the X chromosome. Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 54
  • 55. Colour Blind cartoon from: http://www.almeidacartoons.com/Med_toons1.html http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 55
  • 56. Hemophilia Another sex-linked disorder. Blood clotting is an example of a metabolic pathway – a series of enzyme-controlled biochemical reactions. It requires globular proteins called clotting factors. A recessive X-linked mutation in hemophiliacs results in one of these factors not being produced. Therefore, the clotting response to injury does not work and the patient can bleed to death. XH XH Normal female XH Y Normal male no allele carried, none written Key to alleles: XH = healthy clotting factors Xh Xh Affected female Xh Y Affected male Xh = no clotting factor Human females can be homozygous or XH Xh Carrier female heterozygous with respect to sex-linked genes. Heterozygous females are carriers. Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 56
  • 57. Hemophilia results from a lack of clotting factors. These are globular proteins, which act as enzymes in the clotting pathway. Read/ research/ review: How can gene transfer be used to treat hemophiliacs? What is the relevance of “the genetic code is universal” in this process? Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 57
  • 58. Hemophilia results from a lack of clotting factors. These are globular proteins, which act as enzymes in the clotting pathway. Chromosome images from Wikipedia: http://en.wikipedia.org/wiki/Y_chromosome http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 58
  • 59. Hemophilia This pedigree chart of the English Royal Family gives us a picture of the inheritance of this X-linked disorder. Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 59
  • 60. Hemophilia Pedigree chart practice State the genotypes of the following family members: 1. Leopold 2. Alice 3. Bob was killed in a tragic croquet accident before his phenotype was determined. Key: female male 4. Britney affected Key to alleles: Not H = healthy clotting factors Affected h = no clotting factor deceased Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 60
  • 61. Hemophilia Pedigree chart practice State the genotypes of the following family members: 1. Leopold Xh Y 2. Alice 3. Bob was killed in a tragic croquet accident before his phenotype was determined. Key: female male 4. Britney affected Key to alleles: Not H = healthy clotting factors Affected h = no clotting factor deceased Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 61
  • 62. Hemophilia Pedigree chart practice State the genotypes of the following family members: 1. Leopold Xh Y 2. Alice XH Xh 3. Bob was killed in a tragic croquet accident before his phenotype was determined. Key: female male 4. Britney affected Key to alleles: Not H = healthy clotting factors Affected h = no clotting factor deceased Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 62
  • 63. Hemophilia Pedigree chart practice State the genotypes of the following family members: 1. Leopold Xh Y 2. Alice XH Xh 3. Bob was killed in a tragic croquet accident before his phenotype was determined. XH Y or Xh Y Key: female male 4. Britney affected Key to alleles: Not H = healthy clotting factors Affected h = no clotting factor deceased Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 63
  • 64. Hemophilia Pedigree chart practice State the genotypes of the following family members: 1. Leopold Xh Y 2. Alice XH Xh 3. Bob was killed in a tragic croquet accident before his phenotype was determined. XH Y or Xh Y Key: female male 4. Britney XH XH or XH Xh affected Key to alleles: Not H = healthy clotting factors Affected h = no clotting factor deceased Royal Family Pedigree Chart from: http://www.sciencecases.org/hemo/hemo.asp http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 64
  • 65. Pedigree Chart Practice Key: female male affected Not Affected deceased Dominant or Recessive? Autosomal or Sex-linked? http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 65
  • 66. Pedigree Chart Practice Key: female male affected Not Affected deceased Dominant or Recessive? Autosomal or Sex-linked? Dominant. A and B are both affected but have produced unaffected (D & F). Therefore A and B must have been carrying recessive healthy alleles. If it were recessive, it would need to be homozygous to be expressed in A & B – and then all offspring would be homozygous recessive. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 66
  • 67. Pedigree Chart Practice Key: female male affected Not Affected deceased Dominant or Recessive? Autosomal or Sex-linked? Dominant. Autosomal. A and B are both affected but have produced Male C can only pass on one X chromosome. If it unaffected (D & F). Therefore A and B must have were carried on X, daughter H would be affected been carrying recessive healthy alleles. by the dominant allele. If it were recessive, it would need to be Tip: Don’t get hung up on the number of homozygous to be expressed in A & B – and then individuals with each phenotype – each all offspring would be homozygous recessive. reproductive event is a matter of chance. Instead focus on possible and impossible genotypes. Draw out the punnet grids if needed. http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 67
  • 68. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% B. 12.5% C. 25% D. 50% Key: female male affected Not Affected deceased http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 68
  • 69. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% Key to alleles: B. 12.5% XH = healthy clotting factors Xh = no clotting factor C. 25% D. 50% Key: female male affected Not Affected deceased http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 69
  • 70. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% Key to alleles: B. 12.5% XH = healthy clotting factors Xh = no clotting factor C. 25% D. 50% What do we know? A = XH Y B = XH Xh (because G = Xh Y) E = XH Y Key: female male affected Not Affected XH deceased Y http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 70
  • 71. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% Key to alleles: B. 12.5% XH = healthy clotting factors Xh = no clotting factor C. 25% D. 50% What do we know? A = XH Y B = XH Xh (because G = Xh Y) E = XH Y Key: female male There is an equal chance of F being XH XH or XH Xh So: affected Not XH XH XH Xh Affected XH deceased Y http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 71
  • 72. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% Key to alleles: B. 12.5% XH = healthy clotting factors Xh = no clotting factor C. 25% D. 50% What do we know? A = XH Y B = XH Xh (because G = Xh Y) E = XH Y Key: female male There is an equal chance of F being XH XH or XH Xh So: affected Not XH XH XH Xh Affected XH XH XH XH XH XH XH XH Xh deceased Y XH Y XH Y XH Y Xh Y http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 72
  • 73. Super Evil Past Paper Question In this pedigree chart for hemophilia, what is the chance that offspring ? will be affected? A. 0% Key to alleles: B. 12.5% XH = healthy clotting factors Xh = no clotting factor C. 25% D. 50% What do we know? A = XH Y B = XH Xh (because G = Xh Y) E = XH Y Key: female male There is an equal chance of F being XH XH or XH Xh So: affected Not XH XH XH Xh Affected XH XH XH XH XH XH XH XH Xh deceased Y XH Y XH Y XH Y Xh Y So there is a 1 in 8 (12.5%) chance of the offspring being affected! http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 73
  • 74. Whirling Gene activity from the awesome Learn.Genetics site: http://learn.genetics.utah.edu/archive/pedigree/mapgene.html http://sciencevideos.wordpress.com 4.3 Theoretical Genetics 74
  • 75. For more IB Biology resources: http://sciencevideos.wordpress.com This presentation is free to view. Please make a donation to one of my chosen charities at Gifts4Good and I will send you the editable pptx file. Click here for more information about Biology4Good charity donations. This is a Creative Commons presentation. It may be linked and embedded but not sold or re-hosted. 4.3 Theoretical Genetics 75