The document discusses Bibliography 2.0, a case study of using the citation management tool Citeulike at the Wellcome Trust Genome Campus. It describes how current publishing incentives encourage "burying" data in publication silos and obscure author identities. Citeulike provides a solution by allowing users to organize citations, see what others are reading, and increase visibility of their work. However, adoption faces barriers from privacy concerns, fragility of tools, and lack of academic rewards for participation.

1. Bibliography 2.0: A case study from the Wellcome Trust Genome Campus Dr. Duncan Hull http://twitter.com/dullhunk European Bioinformatics Institute, EBI.ac.uk e-Science workshop: The influence and impact of Web 2.0 on various applications 11th-12th May 2010, Edinburgh

4. EBI: a data hub for bioinformatics in Europe Literature ebi.ac.uk/citexplore DNA +RNA sequences ebi.ac.uk/ena Genomes: ensembl.org Transcriptomes e.g. ArrayExpress Protein structure ebi.ac.uk/pdbe Protein domains, families ebi.ac.uk/interpro Pathways reactome.org Systems biomodels.net Small molecules ebi.ac.uk/chebi and ebi.ac.uk/chembl Protein sequence uniprot.org Protein protein interactions ebi.ac.uk/intact ~400 staff (research/services), publishing data on the web

5. 21.05.10 e.g. Chemical Entities of Biological Interest (ChEBI) Free database /ontology of 500,000 small molecules (many drugs)

6. The Wellcome Trust Sanger Institute 21.05.10 Alex Bateman ~900 Sanger staff (total)

7. Shared Library 21.05.10 Annual Journal subscription budget £500,000 (modest compared to multi million pound journal budgets of university libraries) More later

14. Click Post to Citeulike 21.05.10

15. Tag it (optional) e.g. author tags 21.05.10

16. Journal picks is a group of 40+ invited users on campus, who select interesting papers 21.05.10

17. 21.05.10 2,016 unique articles in journal picks (less than one year) 3,880,055 unique articles total

18. Citeulike + ZeitGeist = CiteGeist http://www.citeulike.org/citegeist 21.05.10

21. And the rest… 21.05.10 www.mendeley.com www.zotero.org www.connotea.org www.mekentosj.com www.hubmed.org www.refworks.com “ iTunes for PDF files” “ Last.fm of research”