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Prof. M.C.Bansal
      MBBS., MS., FICOG., MICOG.
     Founder Principal & Controller,
Jhalawar Medical College & Hospital
                           Jjalawar.
MGMC & Hospital , sitapura ., Jaipur
 Prenatal diagnosis employs a variety of techniques to
    determine the health and condition of an unborn
    fetus. Without knowledge gained by prenatal
    diagnosis, there could be an untoward outcome for the
    fetus or the mother or both.
    Congenital anomalies account for 20 to 25% of
    perinatal deaths.
    Specifically, prenatal diagnosis is helpful for:
   Managing the remaining weeks of the pregnancy
   Determining the outcome of the pregnancy
   Planning for possible complications with the birth
    process
   Planning for problems that may occur in the newborn
    infant
   Deciding whether to continue the pregnancy
   Finding conditions that may affect future pregnancies
 There are a variety of non-invasive and invasive
    techniques available for prenatal diagnosis. Each of
    them can be applied only during specific time periods
    during the pregnancy for greatest utility. The
    techniques employed for prenatal diagnosis include:
   Amniocentesis
   Chorionic villus sampling
   Fetal blood cells in maternal blood
   Maternal serum alpha-fetoprotein
   Maternal serum beta-HCG
   Maternal serum estriol
   Inhibin A
   Pregnancy associated plasma protein A
Amniocentesis
TIME TO PERFORM:-14 and 20 weeks gestation .
  (Enough amniotic fluid is present for this to be
  accomplished starting about 14 weeks gestation.)
  However, an ultrasound examination always proceeds
  amniocentesis in order to determine gestational age, the
  position of the fetus and placenta, and determine if
  enough amniotic fluid is present.
  Within the amniotic fluid are fetal cells (mostly
  derived from fetal skin).
  After the amniotic fluid is extracted, the fetal cells are
  separated from the sample. The cells are grown in a
  culture medium, then fixed and stained for chromosome
  analysis, biochemical analysis, and molecular biologic
  analysis.
 In the third trimester of pregnancy, the amniotic fluid
  can be analyzed for determination of fetal lung
  maturity. This is important when the fetus is below
  35 to 36 weeks gestation, because the lungs may not
  be mature enough to sustain life. This is because the
  lungs are not producing enough surfactant. After
  birth, the infant will develop respiratory distress
  syndrome from hyaline membrane disease.
 The amniotic fluid can be analyzed by fluorescence
  polarization (fpol), for lecithin:sphingomyelin (LS)
  ration, and/or for phosphatidyl glycerol (PG).
Chorionic Villus Sampling (CVS)
 CVS can be safely performed between 9.5 and 12.5 weeks
    gestation.
   Sampling of cells from the placental chorionic villi.
    These cells can then be analyzed by a variety of techniques.
    The most common test employed on cells obtained by CVS
    is chromosome analysis to determine the karyotype of
    the fetus.
   The cells can also be grown in culture for biochemical or
    molecular biologic analysis
   Disadvantage :- invasive procedure, and it has a small but
    significant rate of morbidity for the fetus; this loss rate is
    about 0.5 to 1% higher than for women undergoing
    amniocentesis. Rarely, CVS can be associated with limb
    defects in the fetus. The possibility of maternal Rh
    sensitization is present. There is also the possibility that
    maternal blood cells in the developing placenta will be
    sampled instead of fetal cells and confound chromosome
    analysis.
Karyotyping
 Tissues must be obtained as fresh as possible for
  culture and without contamination.
 A useful procedure is to wash the tissue samples in
  sterile saline prior to placing them into cell culture
  media.
 Tissues with the best chance for growth are those with
  the least maceration: placenta, lung, diaphragm.
 Sample Collection
 A karyotype will be done on the white blood cells which are
  actively dividing (a state known as mitosis).
 During pregnancy, the sample can either be amniotic fluid
  collected during an amniocentesis or a piece of the
  placenta collected during a chorionic villi sampling test
  (CVS). The amniotic fluid contains fetal skin cells
  which are used to generate a karyotype.
 Separating the Cells
 In order to analyze chromosomes, the sample must contain
  cells that are actively dividing (or in mitosis). In blood,
  the white blood cells are actively dividing cells. Most fetal
  cells are actively dividing. Once the sample reaches the
  cytogenetics lab, the non-divided cells are separated from
  the dividing cells using special chemicals.
 Growing Cells
 In order to have enough cells to analyze, the dividing
  cells are grown in special media or a cell culture. This
  media contains chemicals and hormones that enable
  the cells to divide and multiply. This process of
  “culturing” the cells can take 3 to 4 days for blood
  cells, and up to a week for fetal cells.
 Synchronizing Cells
 Chromosome are long string of human DNA. In order
  to see chromosomes under a
  microscope, chromosomes have to be in their most
  compact form. This compact form occurs at a specific
  stage of mitosis called metaphase. In order to get all
  the cells to this specific stage of cell division, the cells
  are treated with a chemical which stops cell division at
  the point where the chromosomes are the most
  compact.
 Releasing the Chromosomes from their Cells
 In order to see these compact chromosomes under a
  microscope, the chromosomes have to be out of the cells.
  This is done by treating the cells with a special solution
  that causes them to burst. This is done while the cells are
  on a microscopic slide. The leftover debris from the white
  blood cells is washed away, and the chromosomes are now
  fixed (or stuck) to the slide.
 Staining the Chromosomes
 Chromosomes are naturally colorless. In order to be able to
  tell one chromosome from another, a special dye called
  Giemsa dye is applied to the chromosomes on the slide.
  Giemsa dye stains regions of chromosomes that are rich in
  the bases adenine (A) and thymine (T). When stained, the
  chromosomes look like strings with light and dark bands.
  Each chromosome has a specific pattern of light and dark
  bands which enables cytogeneticist to tell one chromosome
  from another. Each dark or light band actually
  encompasses hundreds of different genes.
 The chromosomes may be stained with aceto- orcein, feulgen or a
    basophilic dye such as toluidine blue or methylene blue if only the
    general morphology is desired. If more detail is desired, the
    chromosomes can be treated with various enzymes in combination
    with stains to yield banding patterns on each chromosome
   Q-banding
    Quinacrine stain
    Fluorescence microscopy
   G-banding
    Giemsa stain
    Additional Conditions
    a. Heat hydrolysis
    b. Trypsin treatment
    c. Giemsa at pH 9.0
   R-banding
    Giemsa or acridine orange
    Negative bands of Q and G reversed
    Heat hydrolysis in buffered salt
   C-banding
    Giemsa stain
    Pretreatment with BaOH or NaOH followed by heat and salt.
 Analysis
 Once chromosomes are stained, the slide is put under the
  microscope and the analysis of the chromosomes begins. A
  picture is taken of the chromosomes and at the end of the
  analysis, the total number of chromosomes will be known
  and there will be a picture of the chromosomes arranged by
  size.
 Counting Chromosomes
 The first step of the analysis is counting the chromosomes.
  Most humans have 46 chromosomes. People with Down
  syndrome have 47 chromosomes. It is also possible for
  people to have missing chromosomes or more than one
  extra chromosome. By looking at just the number of
  chromosomes, it is possible to diagnose different
  conditions including Down syndrome.
 Looking at the Structure
 In addition to looking at the total number of
  chromosomes and the sex chromosomes, the
  cytogeneticist will also look at the structure of the
  specific chromosomes to make sure that there is no
  missing or additional material, no structural
  abnormalities like translocations and a variety of other
  possible chromosome abnormalities.
 The Final Result
 In the end, the final karyotype test shows the total
  number of chromosomes, the sex of the person being
  studied, and if there are any structural abnormalities
  with any of the individual chromosomes. A digital
  picture of the chromosomes is generated with all of
  the chromosomes arranged by number.
Spectral karyotype (SKY
technique)
 Spectral karyotyping is a
  molecular cytogenetic technique used to
  simultaneously visualize all the pairs
  of chromosomes in an organism in different colors.
 Fluorescently labeled probes for each chromosome are
  made by labeling chromosome-specific DNA with
  different fluorophores. Because there are a limited
  number of spectrally-distinct fluorophores, a
  combinatorial labeling method is used to generate
  many different colors.
 Neural tube defects can be distinguished from other
  fetal defects (such as abdominal wall defects) by use of
  the acetylcholinesterase test performed on amniotic
  fluid obtained by amniocentesis
 If the acetylcholinesterase is elevated along with
  MSAFP then a neural tube defect is likely. If the
  acetylcholinesterase is not detectable, then some other
  fetal defect is suggested
DNA Probes
 Fetal cells obtained via amniocentesis or CVS can be analyzed by
    probes specific for DNA sequences.
    One method employs restriction fragment length
    polymorphism (RFLP) analysis. This method is useful for
    detection of mutations involving genes that are closely linked to
    the DNA restriction fragments generated by the action of an
    endonuclease.
   The DNA of family members is analyzed to determine
    differences by RFLP analysis.
   In some cases, if the DNA sequence of a gene is known, a probe
    to a DNA sequence specific for a genetic marker is available, and
    the polymerase chain reaction (PCR) technique can be applied
    for diagnosis.
   There are many genetic diseases, but only in a minority have
    particular genes been identified, and tests to detect them
    have been developed in some of these. Thus, it is not possible to
    detect all genetic diseases. Moreover, testing is confounded by
    the presence of different mutations in the same
    gene, making testing more complex
 In RFLP analysis, the DNA sample is broken into
  pieces (digested) by restriction enzymes and the
  resulting restriction fragments are separated according
  to their lengths by gel electrophoresis.
 Although now largely obsolete due to the rise of
  inexpensive DNA sequencing technologies, RFLP
  analysis was the first DNA profiling technique
  inexpensive enough to see widespread application.
 In addition to genetic fingerprinting, RFLP was an
  important tool in genome mapping, localization of
  genes for genetic disorders, determination
  of risk for disease, and paternity testing.
Maternal blood sampling for fetal
blood cells
 This is a new technique that makes use of the phenomenon
  of fetal blood cells gaining access to maternal circulation
  through the placental villi. Ordinarily, only a very small
  number of fetal cells enter the maternal circulation in this
  fashion (not enough to produce a positive Kleihauer-
  Betke test for fetal-maternal hemorrhage). The fetal cells
  can be sorted out and analyzed by a variety of techniques to
  look for particular DNA sequences, but without the risks
  that these latter two invasive procedures inherently have.
 Fluorescence in-situ hybridization (FISH) is one
  technique that can be applied to identify particular
  chromosomes of the fetal cells recovered from maternal
  blood and diagnose aneuploid conditions such as the
  trisomies and monosomy X.
 The problem with this technique is that it is difficult to get
  many fetal blood cells. There may not be enough to reliably
  determine anomalies of the fetal karyotype or assay for
  other abnormalities.
 FISH (performed on fresh tissue or paraffin
  blocks)
 In addition to karyotyping, fluorescence in situ
  hybridization (FISH) can be useful. A wide variety of
  probes are available. It is useful for detecting
  aneuploid conditions (trisomies, monosomies).
 Fresh cells are desirable, but the method can be
  applied even to fixed tissues stored in paraffin blocks,
  though working with paraffin blocks is much more
  time consuming and interpretation can be difficult
 The ability to use FISH on paraffin blocks means that
  archival tissues can be examined in cases where
  karyotyping was not performed, or cells didn't grow in
  culture.
A metaphase cell positive for thebcr/abl rearrangement (associated
withchronic myelogenous leukemia) using FISH. The chromosomes can be
seen in blue. The chromosome that is labeled with green and red spots is the
one where the wrong rearrangement is present
Maternal serum alpha-fetoprotein
(MSAFP)
 The developing fetus has two major blood
  proteins--albumin and alpha-fetoprotein (AFP).
 Since adults typically have only albumin in their
 blood, the MSAFP test can be utilized to
 determine the levels of AFP from the fetus.
 Ordinarily, only a small amount of AFP gains
 access to the amniotic fluid and crosses the
 placenta to mother's blood.
 However, when there is a neural tube defect in the
 fetus, from failure of part of the embryologic
 neural tube to close, then there is a means for
 escape of more AFP into the amniotic fluid.
 Neural tube defects include anencephaly .Also, if there
  is an omphalocele or gastroschisis (both are defects in
  the fetal abdominal wall), the AFP from the fetus will
  end up in maternal blood in higher amounts.
 The blood taken is that from mom, but a sample can
  be obtained for testing from amniotic fluid.
 The AFP test is not diagnostic. It can only be used to
  test for the increased likelihood of an abnormality or
  birth defect.
  Alpha-Fetoprotein is a substance produced by the
  fetus in utero. AFP stops being produced once the
  baby is born. The AFP is excreted in the fetal urine
  which crosses into the mother’s blood stream. This is
  why AFP can be detected by a blood sample taken
  from the pregnant mother.
 MSAFP may be performed between the 14th and 22nd
    weeks of pregnancy, however it seems to be most
    accurate during the 16th to 18th week. Your levels of
    AFP vary during pregnancy so accurate pregnancy
    dating is imperative for more reliable screening
    results.
   All pregnant women should be offered the MSAFP
    screening, but it is especially recommended for:
   Women who have a family history of birth defects
   Women who are 35 years or older
   Women who used possible harmful medications or
    drugs during pregnancy
   Women who have diabetes
 NORMAL VALUES:-
 Adults: <15 ng/mL (15 mcg/L)
 Fetal blood (first trimester): Peak 200-400 mg/dL (2-4 g/L)
 Pregnancy (2nd trimester):
    14 weeks' gestation: Median 25.6 ng/mL (25.6 mcg/L)
    15 weeks' gestation: Median 29.9 ng/mL (29.9 mcg/L)
    16 weeks' gestation: Median 34.8 ng/mL (34.8 mcg/L)
    17 weeks' gestation: Median 40.6 ng/mL (40.6 mcg/L)
    18 weeks' gestation: Median 47.3 ng/mL (47.3 mcg/L)
    19 weeks' gestation: Median 55.1 ng/mL (55.1 mcg/L)
    20 weeks' gestation: Median 64.3 ng/mL (64.3 mcg/L)
    21 weeks' gestation: Median 74.9 ng/mL (74.9 mcg/L)
 The MSAFP is typically reported as multiples of the mean
  (MoM).
 The greater the MoM, the more likely a defect is present
 The multiple of the median (MoM) value is adjusted for
  maternal weight, race, diabetes mellitus, and twin pregnancy
 However, the MSAFP can be elevated for a variety of
  reasons which are not related to fetal neural tube or
  abdominal wall defects, so this test is not 100%
  specific.
 The most common cause for an elevated MSAFP is
  a wrong estimation of the gestational age of the
  fetus.
 Using a combination of MSAFP screening and
  ultrasonography, almost all cases of anencephaly can
  be found and most cases of spina bifida.
 The MSAFP can also be useful in screening for Down
  syndrome and other trisomies.
 The MSAFP tends to be lower when Down syndrome
  or other chromosomal abnormalities is present.
Maternal serum beta-HCG
 The hormone human chorionic gonadotropin (better
  known as hCG) is produced during pregnancy. It is
  made by cells that form the placenta, which nourishes
  the egg after it has been fertilized and becomes
  attached to the uterine wall.
 Levels can first be detected by a blood test about 11
  days after conception and about 12 - 14 days after
  conception by a urine test.
 In general the hCG levels will double every 72 hours.
  The level will reach its peak in the first 8 - 11 weeks
  of pregnancy and then will decline and level off for the
  remainder of the pregnancy.
 An hCG level of less than 5mIU/ml is considered
  negative for pregnancy, and anything above
  25mIU/ml is considered positive for pregnancy.
 The hCG hormone is measured in milli-
  international units per milliliter (mIU/ml).
 A transvaginal ultrasound should be able to show at
  least a gestational sac once the hCG levels have
  reached between 1,000 - 2,000mIU/ml.
 There are two common types of hCG tests. A
  qualitative hCG test detects if hCG is present in the
  blood. A quantitative hCG test (or beta hCG)
  measures the amount of hCG actually present in the
  blood.
   Guideline to hCG levels during pregnancy:
   hCG levels in weeks from LMP (gestational age)* :
   3 weeks LMP: 5 - 50 mIU/ml
   4 weeks LMP: 5 - 426 mIU/ml
   5 weeks LMP: 18 - 7,340 mIU/ml
   6 weeks LMP: 1,080 - 56,500 mIU/ml
   7 - 8 weeks LMP: 7, 650 - 229,000 mIU/ml
   9 - 12 weeks LMP: 25,700 - 288,000 mIU/ml
   13 - 16 weeks LMP: 13,300 - 254,000 mIU/ml
   17 - 24 weeks LMP: 4,060 - 165,400 mIU/ml
   25 - 40 weeks LMP: 3,640 - 117,000 mIU/ml
   Non-pregnant females: <5.0 mIU/ml
   Postmenopausal females: <9.5 mIU/ml
 What can a low hCG level mean?
 A low hCG level can mean any number of things and
  should be rechecked within 48-72 hours to see how
  the level is changing. A low hCG level could indicate:
 Miscalculation of pregnancy dating
 Possible miscarriage or blighted ovum
 Ectopic pregnancy
 What can a high hCG level mean?
 A high level of hCG can also mean a number of things
  and should be rechecked within 48-72 hours to
  evaluate changes in the level. A high hCG level can
  indicate:
 Miscalculation of pregnancy dating
 Molar pregnancy
 Multiple pregnancy
Maternal serum estriol
 The amount of estriol in maternal serum is dependent
  upon a viable fetus, a properly functioning placenta,
  and maternal well-being.
 The substrate for estriol begins as
  dehydroepiandrosterone (DHEA) made by the fetal
  adrenal glands. This is further metabolized in the
  placenta to estriol. The estriol crosses to the maternal
  circulation and. is excreted by the maternal kidney
  in urine or by the maternal liver in the bile
 The measurement of serial estriol levels in the third
  trimester will give an indication of general well-being
  of the fetus.
 If the estriol level drops, then the fetus is threatened
  and delivery may be necessary emergently.
 Estriol tends to be lower when Down syndrome is
  present and when there is adrenal hypoplasia with
  anencephaly.
 When it is used this way, each sample should be drawn
  at the same time each day.
Inhibin-A
 Inhibin is secreted by the placenta and the corpus
    luteum.
   Inhibin A is made by the placenta during pregnancy.
   The level of inhibin A in the blood is used in a
    maternal serum quadruple screening test. Generally
    done between 15 and 20 weeks
   Inhibin-A can be measured in maternal serum.
   An increased level of inhibin-A is associated with an
    increased risk for trisomy 21.
   A high inhibin-A may be associated with a risk for
    preterm delivery.
Pregnancy-associated plasma
protein A (PAPP-A)
 Pregnancy-associated plasma protein A,
  pappalysin 1, also known as PAPPA, is a protein used
  in screening tests for Down syndrome
 Low levels of PAPP-A as measured in maternal serum
  during the first trimester may be associated with fetal
  chromosomal anomalies including trisomies 13, 18,
  and 21.
 In addition, low PAPP-A levels in the first trimester
  may predict an adverse pregnancy outcome, including
  a small for gestational age (SGA) baby or stillbirth.
 A high PAPP-A level may predict a large for
  gestational age (LGA) baby.
Triple" or "Quadruple" screen

 Combining the maternal serum assays may aid in
  increasing the sensitivity and specificity of detection
  for fetal abnormalities.
 The classic test is the triple screen for alpha-
  fetoprotein (MSAFP), beta-HCG, and estriol (uE3).
  The "quadruple screen" adds inhibin-A.
TRIPLE TEST
 The triple test, also called triple screen, the
  Kettering test or the Bart's test, is an investigation
  performed during pregnancy in the second trimester
  to classify a patient as either high-risk or low-risk for
  chromosomal abnormalities (and neural tube defects).
 The Triple test measures serum levels
  of AFP, estriol, and beta-hCG, with a
  70% sensitivity and 5% false-positive rate.
 The triple test measures the following three levels in the
  maternal serum:
 alpha-fetoprotein (AFP)
 human chorionic gonadotropin (hCG)
 unconjugated estriol (UE3)


 AFP              UE3              hCG               ASSOCIATED
                                                     CONDITIONS
 LOW              LOW              HIGH              DOWN
                                                     SYNDROME
 LOW              LOW              LOW               TRISOMY
                                                     18(EDWARD
                                                     SYNDROME)
 HIGH             N/A              N/A               NEURAL TUBE
                                                     DEFECT LIKE
                                                     SPINA BIFIDA,
                                                     MULTIPLE
                                                     GESTATIONS,OMP
                                                     HALOCELE
 Quadruple test
 A test of levels of dimeric inhibin A (DIA) is
  sometimes added to the other three tests, under the
  name "quadruple test.” Other names used include
  "quad test", "quad screen", or "tetra screen." Inhibin A
  (DIA) will be found high in cases of Trisomy 21 and
  low in cases of Trisomy 18.
 Biochemical Analysis
 Tissues can be obtained for cell culture or for
  extraction of compounds that can aid in identification
  of inborn errors of metabolism. Examples include:
 long-chain fatty acids (adrenoleukodystrophy)
 amino acids (aminoacidurias)
Thank you….
THANK YOU

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Interdprtmntal seminar

  • 1. Prof. M.C.Bansal MBBS., MS., FICOG., MICOG. Founder Principal & Controller, Jhalawar Medical College & Hospital Jjalawar. MGMC & Hospital , sitapura ., Jaipur
  • 2.  Prenatal diagnosis employs a variety of techniques to determine the health and condition of an unborn fetus. Without knowledge gained by prenatal diagnosis, there could be an untoward outcome for the fetus or the mother or both.  Congenital anomalies account for 20 to 25% of perinatal deaths.  Specifically, prenatal diagnosis is helpful for:  Managing the remaining weeks of the pregnancy  Determining the outcome of the pregnancy  Planning for possible complications with the birth process  Planning for problems that may occur in the newborn infant  Deciding whether to continue the pregnancy  Finding conditions that may affect future pregnancies
  • 3.  There are a variety of non-invasive and invasive techniques available for prenatal diagnosis. Each of them can be applied only during specific time periods during the pregnancy for greatest utility. The techniques employed for prenatal diagnosis include:  Amniocentesis  Chorionic villus sampling  Fetal blood cells in maternal blood  Maternal serum alpha-fetoprotein  Maternal serum beta-HCG  Maternal serum estriol  Inhibin A  Pregnancy associated plasma protein A
  • 4. Amniocentesis TIME TO PERFORM:-14 and 20 weeks gestation . (Enough amniotic fluid is present for this to be accomplished starting about 14 weeks gestation.) However, an ultrasound examination always proceeds amniocentesis in order to determine gestational age, the position of the fetus and placenta, and determine if enough amniotic fluid is present. Within the amniotic fluid are fetal cells (mostly derived from fetal skin). After the amniotic fluid is extracted, the fetal cells are separated from the sample. The cells are grown in a culture medium, then fixed and stained for chromosome analysis, biochemical analysis, and molecular biologic analysis.
  • 5.  In the third trimester of pregnancy, the amniotic fluid can be analyzed for determination of fetal lung maturity. This is important when the fetus is below 35 to 36 weeks gestation, because the lungs may not be mature enough to sustain life. This is because the lungs are not producing enough surfactant. After birth, the infant will develop respiratory distress syndrome from hyaline membrane disease.  The amniotic fluid can be analyzed by fluorescence polarization (fpol), for lecithin:sphingomyelin (LS) ration, and/or for phosphatidyl glycerol (PG).
  • 6. Chorionic Villus Sampling (CVS)  CVS can be safely performed between 9.5 and 12.5 weeks gestation.  Sampling of cells from the placental chorionic villi. These cells can then be analyzed by a variety of techniques.  The most common test employed on cells obtained by CVS is chromosome analysis to determine the karyotype of the fetus.  The cells can also be grown in culture for biochemical or molecular biologic analysis  Disadvantage :- invasive procedure, and it has a small but significant rate of morbidity for the fetus; this loss rate is about 0.5 to 1% higher than for women undergoing amniocentesis. Rarely, CVS can be associated with limb defects in the fetus. The possibility of maternal Rh sensitization is present. There is also the possibility that maternal blood cells in the developing placenta will be sampled instead of fetal cells and confound chromosome analysis.
  • 7. Karyotyping  Tissues must be obtained as fresh as possible for culture and without contamination.  A useful procedure is to wash the tissue samples in sterile saline prior to placing them into cell culture media.  Tissues with the best chance for growth are those with the least maceration: placenta, lung, diaphragm.
  • 8.  Sample Collection  A karyotype will be done on the white blood cells which are actively dividing (a state known as mitosis).  During pregnancy, the sample can either be amniotic fluid collected during an amniocentesis or a piece of the placenta collected during a chorionic villi sampling test (CVS). The amniotic fluid contains fetal skin cells which are used to generate a karyotype.  Separating the Cells  In order to analyze chromosomes, the sample must contain cells that are actively dividing (or in mitosis). In blood, the white blood cells are actively dividing cells. Most fetal cells are actively dividing. Once the sample reaches the cytogenetics lab, the non-divided cells are separated from the dividing cells using special chemicals.
  • 9.  Growing Cells  In order to have enough cells to analyze, the dividing cells are grown in special media or a cell culture. This media contains chemicals and hormones that enable the cells to divide and multiply. This process of “culturing” the cells can take 3 to 4 days for blood cells, and up to a week for fetal cells.  Synchronizing Cells  Chromosome are long string of human DNA. In order to see chromosomes under a microscope, chromosomes have to be in their most compact form. This compact form occurs at a specific stage of mitosis called metaphase. In order to get all the cells to this specific stage of cell division, the cells are treated with a chemical which stops cell division at the point where the chromosomes are the most compact.
  • 10.  Releasing the Chromosomes from their Cells  In order to see these compact chromosomes under a microscope, the chromosomes have to be out of the cells. This is done by treating the cells with a special solution that causes them to burst. This is done while the cells are on a microscopic slide. The leftover debris from the white blood cells is washed away, and the chromosomes are now fixed (or stuck) to the slide.  Staining the Chromosomes  Chromosomes are naturally colorless. In order to be able to tell one chromosome from another, a special dye called Giemsa dye is applied to the chromosomes on the slide. Giemsa dye stains regions of chromosomes that are rich in the bases adenine (A) and thymine (T). When stained, the chromosomes look like strings with light and dark bands. Each chromosome has a specific pattern of light and dark bands which enables cytogeneticist to tell one chromosome from another. Each dark or light band actually encompasses hundreds of different genes.
  • 11.  The chromosomes may be stained with aceto- orcein, feulgen or a basophilic dye such as toluidine blue or methylene blue if only the general morphology is desired. If more detail is desired, the chromosomes can be treated with various enzymes in combination with stains to yield banding patterns on each chromosome  Q-banding Quinacrine stain Fluorescence microscopy  G-banding Giemsa stain Additional Conditions a. Heat hydrolysis b. Trypsin treatment c. Giemsa at pH 9.0  R-banding Giemsa or acridine orange Negative bands of Q and G reversed Heat hydrolysis in buffered salt  C-banding Giemsa stain Pretreatment with BaOH or NaOH followed by heat and salt.
  • 12.  Analysis  Once chromosomes are stained, the slide is put under the microscope and the analysis of the chromosomes begins. A picture is taken of the chromosomes and at the end of the analysis, the total number of chromosomes will be known and there will be a picture of the chromosomes arranged by size.  Counting Chromosomes  The first step of the analysis is counting the chromosomes. Most humans have 46 chromosomes. People with Down syndrome have 47 chromosomes. It is also possible for people to have missing chromosomes or more than one extra chromosome. By looking at just the number of chromosomes, it is possible to diagnose different conditions including Down syndrome.
  • 13.  Looking at the Structure  In addition to looking at the total number of chromosomes and the sex chromosomes, the cytogeneticist will also look at the structure of the specific chromosomes to make sure that there is no missing or additional material, no structural abnormalities like translocations and a variety of other possible chromosome abnormalities.  The Final Result  In the end, the final karyotype test shows the total number of chromosomes, the sex of the person being studied, and if there are any structural abnormalities with any of the individual chromosomes. A digital picture of the chromosomes is generated with all of the chromosomes arranged by number.
  • 14. Spectral karyotype (SKY technique)  Spectral karyotyping is a molecular cytogenetic technique used to simultaneously visualize all the pairs of chromosomes in an organism in different colors.  Fluorescently labeled probes for each chromosome are made by labeling chromosome-specific DNA with different fluorophores. Because there are a limited number of spectrally-distinct fluorophores, a combinatorial labeling method is used to generate many different colors.
  • 15.
  • 16.
  • 17.
  • 18.  Neural tube defects can be distinguished from other fetal defects (such as abdominal wall defects) by use of the acetylcholinesterase test performed on amniotic fluid obtained by amniocentesis  If the acetylcholinesterase is elevated along with MSAFP then a neural tube defect is likely. If the acetylcholinesterase is not detectable, then some other fetal defect is suggested
  • 19. DNA Probes  Fetal cells obtained via amniocentesis or CVS can be analyzed by probes specific for DNA sequences.  One method employs restriction fragment length polymorphism (RFLP) analysis. This method is useful for detection of mutations involving genes that are closely linked to the DNA restriction fragments generated by the action of an endonuclease.  The DNA of family members is analyzed to determine differences by RFLP analysis.  In some cases, if the DNA sequence of a gene is known, a probe to a DNA sequence specific for a genetic marker is available, and the polymerase chain reaction (PCR) technique can be applied for diagnosis.  There are many genetic diseases, but only in a minority have particular genes been identified, and tests to detect them have been developed in some of these. Thus, it is not possible to detect all genetic diseases. Moreover, testing is confounded by the presence of different mutations in the same gene, making testing more complex
  • 20.  In RFLP analysis, the DNA sample is broken into pieces (digested) by restriction enzymes and the resulting restriction fragments are separated according to their lengths by gel electrophoresis.  Although now largely obsolete due to the rise of inexpensive DNA sequencing technologies, RFLP analysis was the first DNA profiling technique inexpensive enough to see widespread application.  In addition to genetic fingerprinting, RFLP was an important tool in genome mapping, localization of genes for genetic disorders, determination of risk for disease, and paternity testing.
  • 21.
  • 22.
  • 23. Maternal blood sampling for fetal blood cells  This is a new technique that makes use of the phenomenon of fetal blood cells gaining access to maternal circulation through the placental villi. Ordinarily, only a very small number of fetal cells enter the maternal circulation in this fashion (not enough to produce a positive Kleihauer- Betke test for fetal-maternal hemorrhage). The fetal cells can be sorted out and analyzed by a variety of techniques to look for particular DNA sequences, but without the risks that these latter two invasive procedures inherently have.  Fluorescence in-situ hybridization (FISH) is one technique that can be applied to identify particular chromosomes of the fetal cells recovered from maternal blood and diagnose aneuploid conditions such as the trisomies and monosomy X.  The problem with this technique is that it is difficult to get many fetal blood cells. There may not be enough to reliably determine anomalies of the fetal karyotype or assay for other abnormalities.
  • 24.  FISH (performed on fresh tissue or paraffin blocks)  In addition to karyotyping, fluorescence in situ hybridization (FISH) can be useful. A wide variety of probes are available. It is useful for detecting aneuploid conditions (trisomies, monosomies).  Fresh cells are desirable, but the method can be applied even to fixed tissues stored in paraffin blocks, though working with paraffin blocks is much more time consuming and interpretation can be difficult  The ability to use FISH on paraffin blocks means that archival tissues can be examined in cases where karyotyping was not performed, or cells didn't grow in culture.
  • 25.
  • 26. A metaphase cell positive for thebcr/abl rearrangement (associated withchronic myelogenous leukemia) using FISH. The chromosomes can be seen in blue. The chromosome that is labeled with green and red spots is the one where the wrong rearrangement is present
  • 27. Maternal serum alpha-fetoprotein (MSAFP)  The developing fetus has two major blood proteins--albumin and alpha-fetoprotein (AFP).  Since adults typically have only albumin in their blood, the MSAFP test can be utilized to determine the levels of AFP from the fetus. Ordinarily, only a small amount of AFP gains access to the amniotic fluid and crosses the placenta to mother's blood.  However, when there is a neural tube defect in the fetus, from failure of part of the embryologic neural tube to close, then there is a means for escape of more AFP into the amniotic fluid.
  • 28.  Neural tube defects include anencephaly .Also, if there is an omphalocele or gastroschisis (both are defects in the fetal abdominal wall), the AFP from the fetus will end up in maternal blood in higher amounts.  The blood taken is that from mom, but a sample can be obtained for testing from amniotic fluid.  The AFP test is not diagnostic. It can only be used to test for the increased likelihood of an abnormality or birth defect. Alpha-Fetoprotein is a substance produced by the fetus in utero. AFP stops being produced once the baby is born. The AFP is excreted in the fetal urine which crosses into the mother’s blood stream. This is why AFP can be detected by a blood sample taken from the pregnant mother.
  • 29.  MSAFP may be performed between the 14th and 22nd weeks of pregnancy, however it seems to be most accurate during the 16th to 18th week. Your levels of AFP vary during pregnancy so accurate pregnancy dating is imperative for more reliable screening results.  All pregnant women should be offered the MSAFP screening, but it is especially recommended for:  Women who have a family history of birth defects  Women who are 35 years or older  Women who used possible harmful medications or drugs during pregnancy  Women who have diabetes
  • 30.  NORMAL VALUES:-  Adults: <15 ng/mL (15 mcg/L)  Fetal blood (first trimester): Peak 200-400 mg/dL (2-4 g/L)  Pregnancy (2nd trimester):  14 weeks' gestation: Median 25.6 ng/mL (25.6 mcg/L)  15 weeks' gestation: Median 29.9 ng/mL (29.9 mcg/L)  16 weeks' gestation: Median 34.8 ng/mL (34.8 mcg/L)  17 weeks' gestation: Median 40.6 ng/mL (40.6 mcg/L)  18 weeks' gestation: Median 47.3 ng/mL (47.3 mcg/L)  19 weeks' gestation: Median 55.1 ng/mL (55.1 mcg/L)  20 weeks' gestation: Median 64.3 ng/mL (64.3 mcg/L)  21 weeks' gestation: Median 74.9 ng/mL (74.9 mcg/L)  The MSAFP is typically reported as multiples of the mean (MoM).  The greater the MoM, the more likely a defect is present  The multiple of the median (MoM) value is adjusted for maternal weight, race, diabetes mellitus, and twin pregnancy
  • 31.  However, the MSAFP can be elevated for a variety of reasons which are not related to fetal neural tube or abdominal wall defects, so this test is not 100% specific.  The most common cause for an elevated MSAFP is a wrong estimation of the gestational age of the fetus.
  • 32.  Using a combination of MSAFP screening and ultrasonography, almost all cases of anencephaly can be found and most cases of spina bifida.  The MSAFP can also be useful in screening for Down syndrome and other trisomies.  The MSAFP tends to be lower when Down syndrome or other chromosomal abnormalities is present.
  • 33. Maternal serum beta-HCG  The hormone human chorionic gonadotropin (better known as hCG) is produced during pregnancy. It is made by cells that form the placenta, which nourishes the egg after it has been fertilized and becomes attached to the uterine wall.  Levels can first be detected by a blood test about 11 days after conception and about 12 - 14 days after conception by a urine test.  In general the hCG levels will double every 72 hours. The level will reach its peak in the first 8 - 11 weeks of pregnancy and then will decline and level off for the remainder of the pregnancy.
  • 34.  An hCG level of less than 5mIU/ml is considered negative for pregnancy, and anything above 25mIU/ml is considered positive for pregnancy.  The hCG hormone is measured in milli- international units per milliliter (mIU/ml).  A transvaginal ultrasound should be able to show at least a gestational sac once the hCG levels have reached between 1,000 - 2,000mIU/ml.  There are two common types of hCG tests. A qualitative hCG test detects if hCG is present in the blood. A quantitative hCG test (or beta hCG) measures the amount of hCG actually present in the blood.
  • 35. Guideline to hCG levels during pregnancy:  hCG levels in weeks from LMP (gestational age)* :  3 weeks LMP: 5 - 50 mIU/ml  4 weeks LMP: 5 - 426 mIU/ml  5 weeks LMP: 18 - 7,340 mIU/ml  6 weeks LMP: 1,080 - 56,500 mIU/ml  7 - 8 weeks LMP: 7, 650 - 229,000 mIU/ml  9 - 12 weeks LMP: 25,700 - 288,000 mIU/ml  13 - 16 weeks LMP: 13,300 - 254,000 mIU/ml  17 - 24 weeks LMP: 4,060 - 165,400 mIU/ml  25 - 40 weeks LMP: 3,640 - 117,000 mIU/ml  Non-pregnant females: <5.0 mIU/ml  Postmenopausal females: <9.5 mIU/ml
  • 36.  What can a low hCG level mean?  A low hCG level can mean any number of things and should be rechecked within 48-72 hours to see how the level is changing. A low hCG level could indicate:  Miscalculation of pregnancy dating  Possible miscarriage or blighted ovum  Ectopic pregnancy
  • 37.  What can a high hCG level mean?  A high level of hCG can also mean a number of things and should be rechecked within 48-72 hours to evaluate changes in the level. A high hCG level can indicate:  Miscalculation of pregnancy dating  Molar pregnancy  Multiple pregnancy
  • 38. Maternal serum estriol  The amount of estriol in maternal serum is dependent upon a viable fetus, a properly functioning placenta, and maternal well-being.  The substrate for estriol begins as dehydroepiandrosterone (DHEA) made by the fetal adrenal glands. This is further metabolized in the placenta to estriol. The estriol crosses to the maternal circulation and. is excreted by the maternal kidney in urine or by the maternal liver in the bile  The measurement of serial estriol levels in the third trimester will give an indication of general well-being of the fetus.
  • 39.  If the estriol level drops, then the fetus is threatened and delivery may be necessary emergently.  Estriol tends to be lower when Down syndrome is present and when there is adrenal hypoplasia with anencephaly.  When it is used this way, each sample should be drawn at the same time each day.
  • 40. Inhibin-A  Inhibin is secreted by the placenta and the corpus luteum.  Inhibin A is made by the placenta during pregnancy.  The level of inhibin A in the blood is used in a maternal serum quadruple screening test. Generally done between 15 and 20 weeks  Inhibin-A can be measured in maternal serum.  An increased level of inhibin-A is associated with an increased risk for trisomy 21.  A high inhibin-A may be associated with a risk for preterm delivery.
  • 41. Pregnancy-associated plasma protein A (PAPP-A)  Pregnancy-associated plasma protein A, pappalysin 1, also known as PAPPA, is a protein used in screening tests for Down syndrome  Low levels of PAPP-A as measured in maternal serum during the first trimester may be associated with fetal chromosomal anomalies including trisomies 13, 18, and 21.  In addition, low PAPP-A levels in the first trimester may predict an adverse pregnancy outcome, including a small for gestational age (SGA) baby or stillbirth.  A high PAPP-A level may predict a large for gestational age (LGA) baby.
  • 42. Triple" or "Quadruple" screen  Combining the maternal serum assays may aid in increasing the sensitivity and specificity of detection for fetal abnormalities.  The classic test is the triple screen for alpha- fetoprotein (MSAFP), beta-HCG, and estriol (uE3). The "quadruple screen" adds inhibin-A.
  • 43. TRIPLE TEST  The triple test, also called triple screen, the Kettering test or the Bart's test, is an investigation performed during pregnancy in the second trimester to classify a patient as either high-risk or low-risk for chromosomal abnormalities (and neural tube defects).  The Triple test measures serum levels of AFP, estriol, and beta-hCG, with a 70% sensitivity and 5% false-positive rate.
  • 44.  The triple test measures the following three levels in the maternal serum:  alpha-fetoprotein (AFP)  human chorionic gonadotropin (hCG)  unconjugated estriol (UE3) AFP UE3 hCG ASSOCIATED CONDITIONS LOW LOW HIGH DOWN SYNDROME LOW LOW LOW TRISOMY 18(EDWARD SYNDROME) HIGH N/A N/A NEURAL TUBE DEFECT LIKE SPINA BIFIDA, MULTIPLE GESTATIONS,OMP HALOCELE
  • 45.  Quadruple test  A test of levels of dimeric inhibin A (DIA) is sometimes added to the other three tests, under the name "quadruple test.” Other names used include "quad test", "quad screen", or "tetra screen." Inhibin A (DIA) will be found high in cases of Trisomy 21 and low in cases of Trisomy 18.
  • 46.  Biochemical Analysis  Tissues can be obtained for cell culture or for extraction of compounds that can aid in identification of inborn errors of metabolism. Examples include:  long-chain fatty acids (adrenoleukodystrophy)  amino acids (aminoacidurias)