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Lecture 2. Concepts in Programming

Bioinformatics and Biocomputing LSM3241
Data
knowledge base
ontology

data grammar
database

database record
data indexing
controlled vocabulary
data model
composite data types
structured data types
primitive data types
byte
bit
run time language
operating system
network
filesystem
Hardware
Storage

blocks

files

size
Network

packets

Memory

data

speed

composite
structured
primitive

bits

CPU
http://shootout.alioth.debian.org/
benchtraj – standard benchmark since 2002
14 pipelined computations in under 130ms
Sr. Director, Technical Product Marketing
@cwvhogue
christopher.hogue@joyent.com
https://github.com/cwvhogue
Bryan Cantrill
Brendan Gregg

Mark Cavage
Dave Pacheco
Ben Rockwood
Max Bruning
Deirdré Straughan
Ben Wen
http://dtrace.org/blogs/
http://joyent.com/blogs/
Twitter: @cwvhogue
christopher.hogue@joyent.com
https://github.com/cwvhogue

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From the classroom to the cloud a journey with node.js - Christopher Hogue