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Taxonomy Ontology GO Meeting Apr 2007

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Chris Mungall
Chris Mungall

New recommendations on linking terms to taxons in GO and OBO

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the end of sensu & what to do about taxonomy Ontology content meeting GO Apr 2007
Two distinct but related projects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Taxon is not a good means of discriminating ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],A more or less rigid stucture enclosing the protoplast of a cell and composed of cellulose and pectin and other organic and inorganic substances . As in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398 )
Consensus check ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
GO currently has some kind of association to taxons ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
position #1: No to taxa ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
position #2 : Yes to some taxon links ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Relevance (applicability) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object]
specificity ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
validity ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
As found in, but not restricted to ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Difficulties ,[object Object],[object Object],[object Object]
What should GO do? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Open questions ,[object Object],[object Object],[object Object],[object Object],[object Object]
Other OBO ontologies ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Summary ,[object Object],[object Object],[object Object],[object Object],[object Object]

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Taxonomy Ontology GO Meeting Apr 2007

  • 1. the end of sensu & what to do about taxonomy Ontology content meeting GO Apr 2007
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Hinweis der Redaktion

  1. And I’m going to be as dry and impersonal as possible. This is a purely technical talk. Mark gave his personal views and admitted to being confused I’m not sleeping either. We want very much to work together. Ontology development is about collaboration.