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Progressione tumorale: nuovi target
                   terapeutici


                    Alessandra Gentile
    Institute for Cancer Research and Treatment - IRCC,
           University of Turin School of Medicine
Outline
• About Invasive Growth
• About the MET gene and Cancer
• A new gene involved in cancer
About Invasive Growth

• Invasive growth is a physiological process that
  occurs during embryonic development and post-
  natal tissue regeneration.
• The genetic program includes control of
  proliferation, cell-scattering, migration and
  protection from apoptosis.
• The MET oncogene, encoding the HGF receptor,
  is a key regulator of invasive growth
About Invasive Growth

• Invasive growth is a physiological process that
  occurs during embryonic development and post-
  natal tissue regeneration.
• The genetic program includes control of
  proliferation, cell-scattering, migration and
  protection from apoptosis.
• The MET oncogene, encoding the HGF receptor,
  is a key regulator of invasive growth
About Invasive Growth

• Invasive growth is a physiological process that
  occurs during embryonic development and post-
  natal tissue regeneration.
• The genetic program includes control of
  proliferation, cell-scattering, migration and
  protection from apoptosis.
• The MET oncogene, encoding the HGF receptor,
  is a key regulator of invasive growth.
The MET oncogene, encodes the HGF receptor



HGF (Scatter Factor)        Sema domain
                             500 AA
                                                      MRS
                            G-P rich                  (PSI)
                            Ig like domains
                            400 AA
  Kringles      Protease-
                like
                            Tyrosine Kinase       P
                                                  P

                                              P
                                              P

                                          Met
                                     (HGF Receptor)
Invasive growth is controlled by specific factors




                                             EGF




      MLP-29 (Liver stem/progenitor cells)
Invasive growth is controlled by specific factors




                                             HGF




      MLP-29 (Liver stem/progenitor cells)
HGF



     Met Receptor
   (tyrosine kinase)


  Signal transduction


     Expression of
a selective set of Genes
  (The Met Signature)



  Invasion & Growth
Plexin B1

                                            MET


                                                                       Integrin α6β 4



                         CD44v6



                Link to cytoskeleton                    P


                                                                        P
                                     PI3K                                           PI3K
                                            p85 P                             p85
                                                                                      CRKL
                                                P                GAB1
                              RAS           GRB2                                        PLCγ
                                                                              GRB2P
                                                 STAT                 SHP2
                                                                  P
             Transient MAP kinase                                            SRC
             activation (proliferation)
                                            Cell-Polarity and
                                            Morphogenesis
                                                                      Sustained MAP and PI3 kinase
                                                                      activation (invasion / apoptosis
C.Boccaccio and P.M.Comoglio. Nature Rev. Cancer.
                                                                      protection)
2006, 6: 637-645.
HGF



     Met Receptor
   (tyrosine kinase)


  Signal transduction


     Expression of
a selective set of Genes
  (The Met Signature)



  Invasion & Growth
About MET



• The MET oncogene, controls the selective
  expression of a functional cluster of genes (The
  “Invasive Growth Signature”)


• The “Signature” can be exploited for the prognosis
  of some invasive-metastatic cancers
MET regulated genes
                          ( The Invasive Growth Signature )
HGF (hours)                 Immediate        Delayed
                            Early            Early            Late
  1 6 24


              Delayed
              Early




                            Biphasic


              Immediate
              Early                                                   2x induced




              Tonic
              Biphasic

                            Tonic
              Late


Total = 250
  genes                                                              2x suppressed
5
                       years
                                                                  The “metagene”
                                                                     Avg.Cluster A
                                                                     - Avg. Cluster B
Cluster
   A

Cluster
   B

          Tumor samples, ordered by survival time

                                                    2x induced




                                               2x suppressed




                                                        E.Medico et al.(unpublished)
About the MET gene
                  and Cancer

• It is over-expressed in response to unfavourable
  micro-environmental conditions, such as hypoxia :
  “Oncogene Expedience”.

• It is constitutively activated in some cancers, by
  amplification, mutations or autocrine loops:
  “Oncogene Addiction”.

• It is good candidate for targeted therapies
Hypoxia promotes invasive growth
by transcriptional activation of the MET Oncogene

                                           Cellular [O2]
  Proteasome
  degradation                                            HIF Proline Hydroxylase

                       pVHL                                                       HIF-1α
                                           α -OH                          α     (regulated)
        Cytoplasm

        Nucleus

                                                                              HIF-1αβ
                     HIF-1β
                                 β
                  (constitutive)


  P (-2619)   S (-411) S (-345) A (-253)     A (-32) START    S (+89)                   A (+353)
                                                                   AP-1


                   HRE-1           HRE-2         asHRE-1 asHRE-2/   HRE-4           HRE-5
                           S (-295)                       HRE-3



                 The MET promoter

                                                         Pennacchietti et al. , Cancer Cell 3: 347 (2003)
About the MET gene
                  and Cancer

• It is over-expressed in response to unfavourable
  micro-environmental conditions, such as hypoxia
  or ionizing radiations: “Oncogene Expedience”.

• It is constitutively activated in some cancers, by
  amplification, mutations or autocrine loops:
  “Oncogene Addiction”.

• It is good candidate for targeted therapies
MET oncogene mutations in Human Ca.


                                                  Sema


                                                    PSI


                                                    IPT

                                                            S985
                                    Juxtamembrane P
                                                            Y1003
                                           domain P
                                      ATP-binding
                                           region
                                                             P Y1234
                                   KD   Activation              1235
                                             Loop            PY
                                          C-terminal
                                                loop


                                                        P   Y1349
                                         Docking site       Y1356
                                                        P

G.Stella, S.Benvenuti et al, submitted
MET oncogene amplification in Human Ca.

                                  C   GTL16




      MET gene amplification

                                  C   GTL16




     MET Protein overexpression
About the MET gene
                   and Cancer

• The oncogene encodes a tyrosine-kinase receptor
  for HGF (“Scatter factor”)
• It is over-expressed in response to unfavourable micro-
  environmental conditions, such as hypoxia or ionizing
  radiations: “Oncogene Expedience”.
• It is constitutively activated in some cancers, by
  amplification, mutations or autocrine loops:
  “Oncogene Addiction”.
• It is good candidate for targeted therapies
Therapeutic inactivation of the MET oncogene
                  can be achieved by:




1.     Small molecules inhibiting the Tyrosine Kinase


2.     Monoclonal Antibodies inducing Met
       “Shedding”
In vitro therapy of Met–addicted human gastric Ca
   to a specific kinase inhibitor (small molecule)




            A. Bertotti, L.Trusolino et al., Science Signaling, 2, issue 100, Dec. 2009
MET Dependency correlates
               with gene amplification




                      <3%                                            MET
                                                    Cell Line
                      ADDICTION                                     copy N°
                                                     EBC-1             5.8
                                                    MKN-45               6
                                                     GTL-16            6.1
97 %                                                HS746T             6.3
EXPEDIENCE




                    P.M.Comoglio and L.Trusolino, Nature Rev. Cancer, In preparation
Gene Therapy with MET antibody




Gene transfer of Lentiviral vector carrying the cDNA for DN30
into the tumor: Cancer cells produce the Monoclonal Antibody
Gene transfer of DN30 RF anti-Met antibodies
  Inhibits growth of U87-MG Glioblastoma
               xenotransplants


   .
                          100
                          90
   % tumor-free animals
                          80
                          70
           free


                          60
                          50
                          40
                                         DN30 RF MAb cDNA
                          30
                          20             ctrl
                          10
                           0
                                2   6   10 14 18 22 26 30 34 38 42 46 50 54 58

                                                   Time (days)

                                                        E.Vigna et al.,Cancer Res. 2008;68:9176
What next ?

• Oa-5d5 antibody, Genetech, preclinical
• DN30 antibody, Metheresis, preclinical
• PF2341066, small molecule, Pfizer, phase I/II clinical
• XL880, small molecule, Exelesis, phase I clinical
• ARQ197, small molecule, ArQule, phase I/II clinical
• MK2461, small molecule, Merck, phase I/II clinical
• SGX523, small molecule, SGX pharma., Phase I clinical
• JNJ38877605, small molecule, J&J, preclinical


                      From P. Comoglio et al, Nature Rev. Drug Discovery, 7, 504
Receptor Tyrosine Kinase (RTKs) superfamily




                               from Blume-Jensen and Hunter, 2001
Orphan Receptor tyrosine kinase family
            1            2

                             Immunoglobulin-like motif


                             Cysteine rich domain
                             (Frizzled-like domain)


                             Kringle domain




                             Tyrosine kinase domain



                             Serine/Threonine rich domain 1
                             Proline rich domain
   937 aa       943 aa
                             Serine/Threonine rich domain 2
Orphan Receptor protein expression
                            in cancer cell lines
        Screened cancer cells

            85
           98%
                           human cancer cell panel



    2                      phospho-Ror1 positive cells

   2%




NCI-H1993




HS746T
Orphan Receptor knock-down impairs cell
             proliferation
     Orphan Recptor*                                Orphan Recptor*




                       Control shRNA
                       shRNA(A)_Orphan Receptor 1
                       shRNA(B)_Orphan Receptor 1
Orphan Receptor knock-down impairs
        anchorage independent cellular growth

                   NCI-H1993          HS746T              PC3
                   Orphan Recptor*   Orphan Recptor*   Orphan Recptor


   Control shRNA




shRNA(A)_Orphan
      Receptor 1



shRNA(B)_Orphan
      Receptor 1
Orphan Receptor knock-down impairs tumor growth



                          120,0


                          100,0
% of tumor free animals




                                                                             HS746T
                           80,0                                              Orphan Recptor*
                           60,0


                           40,0
                                                                            Control shRNA

                           20,0                                             shRNA(A)_Orphan Receptor 1
                                                                            shRNA(B)_Orphan Receptor 1
                            0,0
                                  0   10   20   30      40   50   60   70

                                                Time (day)
IRCC – Candiolo (Italy)

                 Director: Paolo M. Comoglio MD

Met and miRNA        Met & Hypoxia           Met gene therapy
S. Giordano          P.Michieli              E.Vigna
S. Corso             S.Pennacchietti         G.Pacchiana
A. Petrelli          M.Galluzzo              R.Albano
C. Migliore          C.Basilico

Met- signature       Met & Stem cells        Met Addiction
E.Medico             C.Boccaccio             L.Trusolino
L.Lazzari            F.De Bacco              A.Bertotti
                     P.Luraghi               D.Torti
                     S. Gastaldi             F.Galimi
Met Mutations        G.Reato
S. Benvenuti                                 Plexins
M.F. Di Renzo                                L.Tamagnone
                                             A.Casazza
“Today Science, Tomorrow Medicine”




IRCC: Institute for Cancer Research
          and Treatment

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Gentile Alessandra Torino 13° Convegno Patologia Immune E Malattie Orfane 21 23 Gennaio 2010 [Modalità C

  • 1. Progressione tumorale: nuovi target terapeutici Alessandra Gentile Institute for Cancer Research and Treatment - IRCC, University of Turin School of Medicine
  • 2. Outline • About Invasive Growth • About the MET gene and Cancer • A new gene involved in cancer
  • 3. About Invasive Growth • Invasive growth is a physiological process that occurs during embryonic development and post- natal tissue regeneration. • The genetic program includes control of proliferation, cell-scattering, migration and protection from apoptosis. • The MET oncogene, encoding the HGF receptor, is a key regulator of invasive growth
  • 4. About Invasive Growth • Invasive growth is a physiological process that occurs during embryonic development and post- natal tissue regeneration. • The genetic program includes control of proliferation, cell-scattering, migration and protection from apoptosis. • The MET oncogene, encoding the HGF receptor, is a key regulator of invasive growth
  • 5. About Invasive Growth • Invasive growth is a physiological process that occurs during embryonic development and post- natal tissue regeneration. • The genetic program includes control of proliferation, cell-scattering, migration and protection from apoptosis. • The MET oncogene, encoding the HGF receptor, is a key regulator of invasive growth.
  • 6. The MET oncogene, encodes the HGF receptor HGF (Scatter Factor) Sema domain 500 AA MRS G-P rich (PSI) Ig like domains 400 AA Kringles Protease- like Tyrosine Kinase P P P P Met (HGF Receptor)
  • 7. Invasive growth is controlled by specific factors EGF MLP-29 (Liver stem/progenitor cells)
  • 8. Invasive growth is controlled by specific factors HGF MLP-29 (Liver stem/progenitor cells)
  • 9. HGF Met Receptor (tyrosine kinase) Signal transduction Expression of a selective set of Genes (The Met Signature) Invasion & Growth
  • 10. Plexin B1 MET Integrin α6β 4 CD44v6 Link to cytoskeleton P P PI3K PI3K p85 P p85 CRKL P GAB1 RAS GRB2 PLCγ GRB2P STAT SHP2 P Transient MAP kinase SRC activation (proliferation) Cell-Polarity and Morphogenesis Sustained MAP and PI3 kinase activation (invasion / apoptosis C.Boccaccio and P.M.Comoglio. Nature Rev. Cancer. protection) 2006, 6: 637-645.
  • 11. HGF Met Receptor (tyrosine kinase) Signal transduction Expression of a selective set of Genes (The Met Signature) Invasion & Growth
  • 12. About MET • The MET oncogene, controls the selective expression of a functional cluster of genes (The “Invasive Growth Signature”) • The “Signature” can be exploited for the prognosis of some invasive-metastatic cancers
  • 13. MET regulated genes ( The Invasive Growth Signature ) HGF (hours) Immediate Delayed Early Early Late 1 6 24 Delayed Early Biphasic Immediate Early 2x induced Tonic Biphasic Tonic Late Total = 250 genes 2x suppressed
  • 14. 5 years The “metagene” Avg.Cluster A - Avg. Cluster B Cluster A Cluster B Tumor samples, ordered by survival time 2x induced 2x suppressed E.Medico et al.(unpublished)
  • 15. About the MET gene and Cancer • It is over-expressed in response to unfavourable micro-environmental conditions, such as hypoxia : “Oncogene Expedience”. • It is constitutively activated in some cancers, by amplification, mutations or autocrine loops: “Oncogene Addiction”. • It is good candidate for targeted therapies
  • 16. Hypoxia promotes invasive growth by transcriptional activation of the MET Oncogene Cellular [O2] Proteasome degradation HIF Proline Hydroxylase pVHL HIF-1α α -OH α (regulated) Cytoplasm Nucleus HIF-1αβ HIF-1β β (constitutive) P (-2619) S (-411) S (-345) A (-253) A (-32) START S (+89) A (+353) AP-1 HRE-1 HRE-2 asHRE-1 asHRE-2/ HRE-4 HRE-5 S (-295) HRE-3 The MET promoter Pennacchietti et al. , Cancer Cell 3: 347 (2003)
  • 17. About the MET gene and Cancer • It is over-expressed in response to unfavourable micro-environmental conditions, such as hypoxia or ionizing radiations: “Oncogene Expedience”. • It is constitutively activated in some cancers, by amplification, mutations or autocrine loops: “Oncogene Addiction”. • It is good candidate for targeted therapies
  • 18. MET oncogene mutations in Human Ca. Sema PSI IPT S985 Juxtamembrane P Y1003 domain P ATP-binding region P Y1234 KD Activation 1235 Loop PY C-terminal loop P Y1349 Docking site Y1356 P G.Stella, S.Benvenuti et al, submitted
  • 19. MET oncogene amplification in Human Ca. C GTL16 MET gene amplification C GTL16 MET Protein overexpression
  • 20. About the MET gene and Cancer • The oncogene encodes a tyrosine-kinase receptor for HGF (“Scatter factor”) • It is over-expressed in response to unfavourable micro- environmental conditions, such as hypoxia or ionizing radiations: “Oncogene Expedience”. • It is constitutively activated in some cancers, by amplification, mutations or autocrine loops: “Oncogene Addiction”. • It is good candidate for targeted therapies
  • 21. Therapeutic inactivation of the MET oncogene can be achieved by: 1. Small molecules inhibiting the Tyrosine Kinase 2. Monoclonal Antibodies inducing Met “Shedding”
  • 22. In vitro therapy of Met–addicted human gastric Ca to a specific kinase inhibitor (small molecule) A. Bertotti, L.Trusolino et al., Science Signaling, 2, issue 100, Dec. 2009
  • 23. MET Dependency correlates with gene amplification <3% MET Cell Line ADDICTION copy N° EBC-1 5.8 MKN-45 6 GTL-16 6.1 97 % HS746T 6.3 EXPEDIENCE P.M.Comoglio and L.Trusolino, Nature Rev. Cancer, In preparation
  • 24. Gene Therapy with MET antibody Gene transfer of Lentiviral vector carrying the cDNA for DN30 into the tumor: Cancer cells produce the Monoclonal Antibody
  • 25. Gene transfer of DN30 RF anti-Met antibodies Inhibits growth of U87-MG Glioblastoma xenotransplants . 100 90 % tumor-free animals 80 70 free 60 50 40 DN30 RF MAb cDNA 30 20 ctrl 10 0 2 6 10 14 18 22 26 30 34 38 42 46 50 54 58 Time (days) E.Vigna et al.,Cancer Res. 2008;68:9176
  • 26. What next ? • Oa-5d5 antibody, Genetech, preclinical • DN30 antibody, Metheresis, preclinical • PF2341066, small molecule, Pfizer, phase I/II clinical • XL880, small molecule, Exelesis, phase I clinical • ARQ197, small molecule, ArQule, phase I/II clinical • MK2461, small molecule, Merck, phase I/II clinical • SGX523, small molecule, SGX pharma., Phase I clinical • JNJ38877605, small molecule, J&J, preclinical From P. Comoglio et al, Nature Rev. Drug Discovery, 7, 504
  • 27. Receptor Tyrosine Kinase (RTKs) superfamily from Blume-Jensen and Hunter, 2001
  • 28. Orphan Receptor tyrosine kinase family 1 2 Immunoglobulin-like motif Cysteine rich domain (Frizzled-like domain) Kringle domain Tyrosine kinase domain Serine/Threonine rich domain 1 Proline rich domain 937 aa 943 aa Serine/Threonine rich domain 2
  • 29. Orphan Receptor protein expression in cancer cell lines Screened cancer cells 85 98% human cancer cell panel 2 phospho-Ror1 positive cells 2% NCI-H1993 HS746T
  • 30. Orphan Receptor knock-down impairs cell proliferation Orphan Recptor* Orphan Recptor* Control shRNA shRNA(A)_Orphan Receptor 1 shRNA(B)_Orphan Receptor 1
  • 31. Orphan Receptor knock-down impairs anchorage independent cellular growth NCI-H1993 HS746T PC3 Orphan Recptor* Orphan Recptor* Orphan Recptor Control shRNA shRNA(A)_Orphan Receptor 1 shRNA(B)_Orphan Receptor 1
  • 32. Orphan Receptor knock-down impairs tumor growth 120,0 100,0 % of tumor free animals HS746T 80,0 Orphan Recptor* 60,0 40,0 Control shRNA 20,0 shRNA(A)_Orphan Receptor 1 shRNA(B)_Orphan Receptor 1 0,0 0 10 20 30 40 50 60 70 Time (day)
  • 33. IRCC – Candiolo (Italy) Director: Paolo M. Comoglio MD Met and miRNA Met & Hypoxia Met gene therapy S. Giordano P.Michieli E.Vigna S. Corso S.Pennacchietti G.Pacchiana A. Petrelli M.Galluzzo R.Albano C. Migliore C.Basilico Met- signature Met & Stem cells Met Addiction E.Medico C.Boccaccio L.Trusolino L.Lazzari F.De Bacco A.Bertotti P.Luraghi D.Torti S. Gastaldi F.Galimi Met Mutations G.Reato S. Benvenuti Plexins M.F. Di Renzo L.Tamagnone A.Casazza
  • 34. “Today Science, Tomorrow Medicine” IRCC: Institute for Cancer Research and Treatment