3. G-language Project Keio University Cornell University
Genome Analysis Environment (GAE) Arakawa et al. (2003) Bioinformatics
“EMBOSS in Perl” - collection of 100s of programs, API for I/O, graphing, statistics
Perl Shell, BioPerl compatible
Genome Projector Arakawa et al. (2009) BMC Bioinformatics
Genome browser using Google Maps API
Pathway Projector Kono et al. (2009) PLoS One
Pathway browser / mapping tool using Google Maps API
Bookmarklet
Intuitive query tool for EMBOSS, GAE services ( >500)
Databases (NCBI Entrez, KEGG, EB-eye, Bio2RDF)
REST/SOAP REST/SOAP web service for GAE Arakawa et al. (2010) NAR
Keio Bioinformatics Web Services Oshita et al. (2011) SCFBM
KBWS
EMBASSY package for 50 web service tools
4.
5. G-language Project: the last 10 years
Bioinformatics JPS GGG NAR WS issue
ISMB Best original paper review review WS paper
Poster Award
RCES GEM System
Bioinformatics BMC Bioinformatics Open-Bio.jp
book
CBI Conference Pathway
marraydb cDNA GPAC MEGU Restauro-G Mashup Awards 4th Genome
SFC Award Best Poster Award ISB GPB ISB ISB GPB
CGR Projector Mashup Awards 6th KBWS
Genome Projector Projector SCFBM PLoS One G-language Bookmarklet SCFBM
Keio Presidential Award BMC
Bioinformatics
2001
2001 2002 2003 2004 2005 2006 2007 2008 2009 2010
v.0.x v.1.0.x v.1.1.x v.1.2.x v.1.3.x v.1.4~5.x v.1.6.x v.1.7.x v.1.8.x
G-language Shell
Inspire v.1.49 release
Windows
support discontinued
v.1.6 release
MacOS X
v.1.7 release
Bluebird/Infinity
2011
KNOB CGR REST/SOAP KBWS
GPAC cDNA
Restauro 2
v.1.1 released Restauro-G
Skyline core
BioPerl compatibility g2s Moco
GEM System E-Cell 3D
v.1.8 release
v.1.0.0 asimo release Shell + Web Service enhancements
GUI (Linux/Windows) SplitsX
marraydb MEGU
Dynamic Loader ism Genome Projector
plug-in function Pathway Projector
Prelude core G-language Bookmarklet
Odyssay Package
g-language.org RCES
6. Statistics
also distributed at bioinformatics.org, CPAN, KNOB, CD-ROM
9. Genome Projector
Zoomable Genome Browser with Multiple Views
powered by Google Maps API
Mash up Awards 4 - Google Award
Arakawa et al. (2009) BMC Bioinformatics
10.
11.
12. G-language Bookmarklet: The Gateway to Semantic Web.
http://www.g-language.org/wiki/bookmarklet
EMBOSS
KBWS Wikipedia
G-language Eijiro
Google
Bio2RDF
PubMed
EB-eye
KEGG/LinkDB Entrez BLAST
