MYB Transcription Factors: A [Comparative] Genome-wide Account in Arabidopsis thaliana: 16th August, CCB@USM, Biswapriya B. Misra, Ph.D.

1. MYB Transcription Factors:
A [Comparative] Genome-wide
Account in Arabidopsis thaliana
Biswapriya Biswavas Misra, Ph.D.
CCB
16th August, 2012

2. Typical Gene Structure
A. thaliana’s MYB Transcription Factors: Functional
Annotations

3. MYB Transcription Factors: Distribution Across
Sequenced Genomes- The Number Game

4. A. thaliana’s MYB Orthologs Across Sequenced Genomes

5. MYB Transcription Factors: Distribution of Promoter
Elements of Genes in A. thaliana Genome

6. GO FAT (Biological Process) Analyses of A. thaliana’s MYBs

7. GO FAT (Molecular Function) Analyses of A. thaliana’s MYBs
GO FAT (Cellular Component) Analyses of A. thaliana’s MYBs

8. PFAM Domain Enrichment Analyses of A. thaliana’s MYBs
InterPro Domain Enrichment Analyses of A. thaliana’s MYBs

9. PROFILE Enrichment Analyses of A. thaliana’s MYBs
SMART Enrichment Analyses of A. thaliana’s MYBs
PROSITE Enrichment Analyses of A. thaliana’s MYBs

10. A. thaliana’s MYB Transcription Factors: Interacting Neighbors
Protein-protein Interactions

11. KEGG Pathway Mapping of A. thaliana’s MYBs
-Representative; *

12. A. thaliana’s MYB Transcription Factors: GO Distribution

13. A. thaliana’s MYB Transcription Factors:
Snapshot of GO Networks

14. A. thaliana’s MYB Transcription Factors:
GO Classification & Distribution

15. A. thaliana’s MYB Transcription Factors:
Synteny Across Genomes [Example- AT1G01060]

16. A. thaliana’s MYB Transcription Factors:
Synteny Across Genomes [Example- AT1G01060]

17. MYB Transcription Factors [HOM000007] Distribution in
Arabidopsis thaliana [Chromosomes]

18. MYB Transcription Factors [HOM000007] Distribution in Ricinus
communis [Scaffolds]
Reduced Number of MYB in
Spurge family Members ?

19. MYB Transcription Factors [HOM000007] Distribution in Manihot
esculenta [Scaffolds]
Reduced Number of MYB in
Spurge family Members ?

20. MYB Transcription Factors [HOM000007] Distribution in Populus
trichocarpa [Linkage groups/Pseudo chromosomes]
…but NOT in case of Salicoids ?

21. MYB Transcription Factors: Structure-based phylogenomics in
Arabidopsis thaliana and Oryza sativa

22. MYB Transcription Factors: Structure-based phylogenomics in
Arabidopsis thaliana and Oryza sativa

23. Stress Responsiveness of AT1G01060

24. Developmental Expression Profile of AT1G01060

25. Expression Profiling Across Multiple Parameters for
an A. thaliana MYB: At1G01060

26. Developmental Expression Profile MAP of AT1G01060

27. Expression Profiling Across of A. thaliana MYB : AT1G17460
Plant & Tissue -specific Expression

28. Cell type Specific Comparative Expression Profiling
of A. thaliana MYB : AT5G53200

29. Root Tip Specific Comparative Expression Profiling
of A. thaliana MYB : AT5G53200

30. Sub-cellular Localization of a Few A. thaliana MYBs

31. Interactome of A. thaliana MYBs in Clusters ?
In Matured Pollens…. [red-higher to fainter-lower]

32. Co-expressed Gene Network of AT1G01060

33. Thank You
Note: Study is based solely on Publicly available Databases,
Platforms/ Softwares, Sequences, Codes, Programs and
Information and are exclusively GENERATED.
Appropriate sources are thanked.
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