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Text mining Montpellier
- 2. Using language to detect potential change in ecosystem services in the light of ecological surprises ! Juan Carlos Rocha & Robin Wikström
- 3. Ecosystem services are the beneïŹts humans receive from nature (MEA 2005) Foley et al. 2005. Science
- 4. 1980 1985 1990 1995 2000 2005 2010 2015 0500100015002000 Year ScientificPapers ISI Web of Knowledge Ecosystem services is a relatively recent ïŹeld of studies. Yet, assessing which ecosystem services are likely to be affected by ecological surprises is one of the greatest challenges of current ecological research.
- 5. âą Knowledge bias: we know a lot about easy to study stuïŹ âą There is the lack of high quality datasets and time series to assess ecosystem services change âą It is diïŹcult to experiment with ecosystems, especially when it comes to large scale phenomena, possible irreversible, with great potential to aïŹect human well-being The problem
- 6. Latent Dirichlet Allocation (LDA) The main goal is to create algorithms for discovering main themes that pervades large and unstructured collection of documents The elemental idea is that documents consist of random mixtures of latent topics, topics that can be represented as a distribution of words The goal is to automatically discover these âhiddenâ topics, without having any prior knowledge about the text and its content
- 7. Model selection & number of topics âą We test Variational Estimation Methods (VEM), correlated topic models (CTM) & Gibbs sampling. âą We tested 5 models with diïŹerent topic numbers (20:100) âą VEM algorithm with 80 topics ïŹt the best the MEA training dataset VEM1 VEM2 VEM3 VEM4 VEM5 0.010 0.012 0.014 0.016 alpha VEM1 VEM2 VEM3 VEM4 VEM5 -1280000 -1240000 -1200000 logLik VEM1 VEM2 VEM3 VEM4 VEM5 500 600 700 800 Perplexity VEM1 VEM2 VEM3 VEM4 VEM5 0.1 0.2 0.3 0.4 0.5 Entropy
- 8. Topics = 80 Millenium Ecosystem AssessmentTopics detection 38 58 5 14 73 41 22 70 45 80 72 55 18 19 15 44 52 56 57 78 9 1 47 28 12 39 29 30 40 75 6 27 4 35 68 71 42 48 11 51 59 2 66 63 25 34 67 3 65 60 46 32 10 21 54 7 37 17 23 69 20 49 26 8 13 16 64 77 76 33 50 53 24 61 62 31 74 79 43 36 Chapter 20 Inland Water Systemsâ2.pdf.txt Chapter 8 Food.pdf.txt Chapter 9 Timber Fuel and Fiber.pdf.txt Chapter 15 Waste Processing and Detoxi...cation.pdf.txt Chapter 17 Cultural and Amenity Services.pdf.txt Chapter 23 Island Systems.pdf.txt Chapter 5 Ecosystem Conditions and Human Wellâbeing.pdf.txt Chapter 6 Vulnerable Peoples and Places.pdf.txt Fisherâ2013âStrengthening_conceptual_foundations_Analysing_frameworks_for_e Stallmanâ2011âEcosystem_services_in_agriculture_determining_suitability_for_pr Powerâ2010âEcosystem_services_and_agriculture_tradeoffs_and_synergies.pdf.t Saadâ2013âLand_use_impacts_on_freshwater_regulation_erosion_regulation_an Mitchellâ2013âLinking_Landscape_Connectivity_and_Ecosystem_Service_Provisi Mannâ2012âEcosystem_Service_Value_and_Agricultural_Conversion_in_the_Am Maskellâ2013âExploring_the_ecological_constraints_to_multiple_ecosystem_serv Cardinaleâ2013âBiodiversity_simultaneously_enhances_the_production_and_stab Jaxâ2013âEcosystem_services_and_ethics.pdf.txt Chapter 28 Synthesis Condition and Trends in Systems and Services Tradeâoffs fo Chenâ2013âChanges_in_land_useland_cover_and_ecosystem_services_in_Cent Chapter 1 MA Conceptual Framework.pdf.txt Nelsonâ2005âChapter 3 Drivers of ecosystem change summary chapter.pdf.txt Chapter 2 Analytical Approaches for Assessing Ecosystem Condition and Human W Chapter 14 Human Health Ecosystem Regulation of Infectious Diseases.pdf.txt Chapter 24 Mountain Systems.pdf.txt ZhengââBenefits_costs_and_livelihood_implications_of_a_regional_payment_for_ Sircelyâ2012âBiodiversity_and_Ecosystem_MultiâFunctionality_Observed_Relatio Langerwischâ2012âPotential_effects_of_climate_change_on_inundation_patterns_ Chapter 13 Climate and Air Quality.pdf.txt QiuââSpatial_interactions_among_ecosystem_services_in_an_urbanizing_agricult Chapter 22 Dryland Systems.pdf.txt Chapter 7 Fresh Water.pdf.txt Chapter 4 Biodiversity.pdf.txt Chapter 18 Marine Fisheries Systems.pdf.txt Chapter 12 Nutrient Cycling.pdf.txt VidalâAbarca_Gutie..rrezâ2013âWhich_are_what_is_their_status_and_what_can_ Chapter 25 Polar Systems.pdf.txt Turnerâ2012âConsequences_of_spatial_heterogeneity_for_ecosystem_services_i Baiâ2012âGrazing_alters_ecosystem_functioning_and_CNP_stoichiometry_of_gra Chapter 10 New Products and Industries from Biodiversity.pdf.txt Acremanâ2013âHow_Wetlands_Affect_Floods.pdf.txt Chapter 16 Regulation of Natural Hazards Floods and Fires.pdf.txt Chapter 11 Biodiversity Regulation of Ecosystem Services.pdf.txt Schmittâ2013âCapturing_Ecosystem_Services_Stakeholders'_Preferences_and_T Chapter 21 Forest and Woodland Systems.pdf.txt Chapter 27 Urban Systems.pdf.txt Chapter 26 Cultivated Systems.pdf.txt Chapter 19 Coastal Systems.pdf.txt 0.2 0.6 Value 02000 Color Key and Histogram Count
- 9. Topics matching Ecosystem Services Topics Words Ecosystem Processes Soil formation 12 species, fallows, soil, biomass, grazed, fallow Primary production 19 soil, carbon, species, freshwater, carbon Nutrient cycling 4 nutrient, organic, fertility, soil, ocean, cycling Water cycling 39 discharge, amazon, inundation, basing, slope Biodiversity 6 species, plant, richness, biodiversity, services Provisioning services Freshwater 75 freshwater, renewable, supply, freshwater, river Food crops 5 nutrition, countries, livestock, africa, health Livestock 11 grazing, steppe, soil, ground, biomass, pools Fisheries 27 marine, ïŹsheries, ïŹsh, coastal, system, ocean Wild animals and plants products Timber 2 forest, countries, carbon, plantations, trees, fao Wood fuel 14 timeber, products, tao, forest, fuelwood, cotton Feed, fuel and ïŹber crops 14 timeber, products, tao, forest, fuelwood, cotton Hydropower Regulating services Air quality regulation 29 atmospheric, emissions, carbon, warming Climate regulation 29 atmospheric, emissions, carbon, warming Water puriïŹcation 73 waste, chemicals, organic, health, exposure Regulation of soil erosion 72 cycle, soil, spatial, erosion, groundwater Pest and disease 1 disease, health, infectious,malaria, transmission Pollination 45 pollination, provision, beneïŹts, farmers, landscape Natural hazards 67 ïŹre, events, ïŹoods, drivers, wetlands, coastal Cultural services 41 landscapes, tourism, traditional, knowledge, heritage Recreation Aesthetic values Knowledge and educational values Spiritual and religious
- 10. Topics = 80 Corpus = 812 papersTopics detection Soilformation Primaryproduction Nutrientcycling Watercycling Biodiversity Freshwater Foodcrops Livestock Fisheries Timber Woodfuel Climateregulation Waterregulation Regulationofsoilerosion Pestanddiseaseregulation Pollination Naturalhazardregulation Cultural West Antarctic IceSheet Collapse Tundra to Forest Termohaline circulation Steppe to tundra Soil structure Soil salinization Sea grass collapse Salt marshes River channel change Peatlands Monsoon weakening Marine foodwebs Marine eutrophication Mangroves collapse Kelps transitions Hypoxia Greenland Forest to savannas Floating plants Fisheries collapse Eutrophication Encroachment Dry land degradation Coral transitions Bivalves collapse Arctic Sea Ice 0.1 0.4 Value 0250 Color Key and Histogram Count Soilformation Primaryproduction Nutrientcycling Watercycling Biodiversity Freshwater Foodcrops Livestock Fisheries Timber Woodfuel Climateregulation Waterregulation Regulationofsoilerosion Pestanddiseaseregulation Pollination Naturalhazardregulation Cultural West Antarctic IceSheet Collapse Tundra to Forest Termohaline circulation Steppe to tundra Soil structure Soil salinization Sea grass collapse Salt marshes River channel change Peatlands Monsoon weakening Marine foodwebs Marine eutrophication Mangroves collapse Kelps transitions Hypoxia Greenland Forest to savannas Floating plants Fisheries collapse Eutrophication Encroachment Dry land degradation Coral transitions Bivalves collapse Arctic Sea Ice 0 0.4 1 Value 180 Color Key and Histogram Count Human Readers Computer reading
- 11. Soilformation Primaryproduction Nutrientcycling Watercycling Biodiversity Freshwater Foodcrops Livestock Fisheries Timber Woodfuel Climateregulation Waterregulation Regulationofsoilerosion Pestanddiseaseregulation Pollination Naturalhazardregulation Cultural West Antarctic IceSheet Collapse Tundra to Forest Termohaline circulation Steppe to tundra Soil structure Soil salinization Sea grass collapse Salt marshes River channel change Peatlands Monsoon weakening Marine foodwebs Marine eutrophication Mangroves collapse Kelps transitions Hypoxia Greenland Forest to savannas Floating plants Fisheries collapse Eutrophication Encroachment Dry land degradation Coral transitions Bivalves collapse Arctic Sea Ice Topics = 80 Corpus = 812 papersTopics detection False positives Soilformation Primaryproduction Nutrientcycling Watercycling Biodiversity Freshwater Foodcrops Livestock Fisheries Timber Woodfuel Climateregulation Waterregulation Regulationofsoilerosion Pestanddiseaseregulation Pollination Naturalhazardregulation Cultural West Antarctic IceSheet Collapse Tundra to Forest Termohaline circulation Steppe to tundra Soil structure Soil salinization Sea grass collapse Salt marshes River channel change Peatlands Monsoon weakening Marine foodwebs Marine eutrophication Mangroves collapse Kelps transitions Hypoxia Greenland Forest to savannas Floating plants Fisheries collapse Eutrophication Encroachment Dry land degradation Coral transitions Bivalves collapse Arctic Sea Ice False negatives
- 12. Zooming problem Ecosystem services categories make sense for MEA authors but not necessarily for other scientist, readers or⊠computers.
- 13. Concluding remarks âą Itâs hard to make students do homework, but even harder to make your computer do it automatically for youâŠErrors âą Broad categories such as supporting & cultural services are hard to identify, we did much better with regulating services. âą Our results open the possibility of using text mining for monitoring trends on ecosystem services at larger scales and real time. Soilformation Primaryproduction Nutrientcycling Watercycling Biodiversity Freshwater Foodcrops Livestock Fisheries Timber Woodfuel Climateregulation Waterregulation Regulationofsoilerosion Pestanddiseaseregulation Pollination Naturalhazardregulation Cultural West Antarctica Ice Sheet collapse ( Tundra to forest (17) Thermohaline circulation (26) Steppe to tundra (10) Soil structure (2) Soil salinization (7) Sea grass collapse (6) Salt marshes (17) River channel change (22) Peatlands (21) Monsoon weakening (9) Marine foodwebs (50) Marine Eutrophication (8) Mangroves collapse (6) Kelps transitions (11) Hypoxia (7) Greenland (20) Forest to savannas (39) Floating plants (4) Fisheries collapse (75) Eutrophication (20) Encroachment (12) Dry land degradation (26) Coral transitions (33) Bivalves collapse (13) Arctic Sea Ice (19) 0 0.4 1 Value 215 Color Key and Histogram Count
- 14. Questions?? e-mail: juan.rocha@su.se twitter: @juanrocha slides: http://criticaltransitions.wordpress.com/ | data: www.regimeshifts.rog
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