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Open Drug Discovery Teams

http://molmatinf.com/oddt.html



                                                  Dr. Alex M. Clark
                                                  Dr. Sean Ekins
                                                  June 2012



   © 2012 Molecular Materials Informatics, Inc.
        and Collaborations in Chemistry
                                 1
App Overview
•   Content aggregator for open chemistry topics such as
    rare and neglected diseases

•   Multiple collection sources, crowd-curated evaluation




•   Open data, free mobile app for iPhone, iPod, iPad
Availability


•   Open Drug Discovery Teams (ODDT) is available free
    from the Apple iTunes AppStore




         http://itunes.apple.com/app/oddt/id517000016
              http://molmatinf.com/products.html
Features
•   Magazine-like interface to medicinal chemistry topics,
    e.g. rare & neglected diseases

•   Data gathered from Twitter hashtags and RSS feeds

•   Inline browsing of web documents

•   Intelligent handling of chemical data (e.g. molecules,
    reactions, auxiliary data)

•   Crowd-curation: endorse, disapprove or comment by
    emitting a tweet
Topics
•   Current topics focus on rare & neglected diseases, and other
    precompetitive areas such as green chemistry and drug repurposing


    Each panel
    represents a
    topic




     Twitter user

       User stats

       About info
Browsing
          •   Entries are displayed in pages, most recent first
                                                                 Endorsements
Filters

                                                                    Entry

                                                                   Viewable
                                                                      link
Crowdsourcing
•   Anyone can tweet data with topic hashtags, e.g.
    #malaria, #sanfilipposyndrome, #greenchemistry

•   Links will be harvested and added to the collection

•   Can adjust existing content:




•   Emits a tweet from within the app, which affects the
Chemistry
•   ODDT understands links chemical data, and has special viewing,
    manipulation and collaboration features for molecules and reactions




•   Other apps such as the Mobile Molecular
    DataSheet allow direct tweeting of
    chemical data with ODDT topic hash
    tags...
Future Developments
•   The Open Drug Discovery Teams project is currently a
    minimum viable product

•   New developments are happening fast, e.g.

    -   More topics

    -   New data sources

    -   Advanced cheminformatics

•   Your feedback is welcome. Download the app, try it
    out, and get in touch!
In the literature

•   A.J. Williams, S. Ekins, A.M. Clark, J. Jack, R. Apodaca,
    "Mobile apps for chemistry in the world of drug
    discovery", Drug Discovery Today, 16, 928-939 (2011)

•   A.M. Clark, A.J. Williams, S. Ekins, "Redefining
    Cheminformatics with Intuitive Collaborative Mobile
    Apps", Molecular Informatics, manuscript in press.

•   S. Ekins, A.M. Clark, A.J. Williams, "Open Drug Discovery
    Teams: A Chemistry Mobile App for Collaboration",
    Molecular Informatics, manuscript in press.
More Information

http://oddt.net
http://molmatinf.com/oddt.html
http://cheminf20.org
http://collabchem.com


                                                  @aclarkxyz
                                                  @collabchem

   © 2012 Molecular Materials Informatics, Inc.
        and Collaborations in Chemistry
                                 11

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Open Drug Discovery Teams Feature Overview

  • 1. Open Drug Discovery Teams http://molmatinf.com/oddt.html Dr. Alex M. Clark Dr. Sean Ekins June 2012 © 2012 Molecular Materials Informatics, Inc. and Collaborations in Chemistry 1
  • 2. App Overview • Content aggregator for open chemistry topics such as rare and neglected diseases • Multiple collection sources, crowd-curated evaluation • Open data, free mobile app for iPhone, iPod, iPad
  • 3. Availability • Open Drug Discovery Teams (ODDT) is available free from the Apple iTunes AppStore http://itunes.apple.com/app/oddt/id517000016 http://molmatinf.com/products.html
  • 4. Features • Magazine-like interface to medicinal chemistry topics, e.g. rare & neglected diseases • Data gathered from Twitter hashtags and RSS feeds • Inline browsing of web documents • Intelligent handling of chemical data (e.g. molecules, reactions, auxiliary data) • Crowd-curation: endorse, disapprove or comment by emitting a tweet
  • 5. Topics • Current topics focus on rare & neglected diseases, and other precompetitive areas such as green chemistry and drug repurposing Each panel represents a topic Twitter user User stats About info
  • 6. Browsing • Entries are displayed in pages, most recent first Endorsements Filters Entry Viewable link
  • 7. Crowdsourcing • Anyone can tweet data with topic hashtags, e.g. #malaria, #sanfilipposyndrome, #greenchemistry • Links will be harvested and added to the collection • Can adjust existing content: • Emits a tweet from within the app, which affects the
  • 8. Chemistry • ODDT understands links chemical data, and has special viewing, manipulation and collaboration features for molecules and reactions • Other apps such as the Mobile Molecular DataSheet allow direct tweeting of chemical data with ODDT topic hash tags...
  • 9. Future Developments • The Open Drug Discovery Teams project is currently a minimum viable product • New developments are happening fast, e.g. - More topics - New data sources - Advanced cheminformatics • Your feedback is welcome. Download the app, try it out, and get in touch!
  • 10. In the literature • A.J. Williams, S. Ekins, A.M. Clark, J. Jack, R. Apodaca, "Mobile apps for chemistry in the world of drug discovery", Drug Discovery Today, 16, 928-939 (2011) • A.M. Clark, A.J. Williams, S. Ekins, "Redefining Cheminformatics with Intuitive Collaborative Mobile Apps", Molecular Informatics, manuscript in press. • S. Ekins, A.M. Clark, A.J. Williams, "Open Drug Discovery Teams: A Chemistry Mobile App for Collaboration", Molecular Informatics, manuscript in press.
  • 11. More Information http://oddt.net http://molmatinf.com/oddt.html http://cheminf20.org http://collabchem.com @aclarkxyz @collabchem © 2012 Molecular Materials Informatics, Inc. and Collaborations in Chemistry 11