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WSC: Science
Resource
Introduction
Cloning is no longer a thing of the past

Biotechnology transforms us and our perspective
of the world

Biotechnology can inspire great controversy

Bioethics: ethics of biological and medical
research(researching for answers to questions
asked)
Biotechnology in the past
Focused on fundamental issues: food &
beverages

Yeast: used by Egyptians to “leaven” bread &
used by Sumerians and Babylonians for beer

Domestication: the start of biotechnology in a
way. Animals were selectively breed, steadily
shaped to fit people’s needs(like today’s
technology)
Biotechnology in the past
In ancient China, moldy soybean curds(anti-
botic) were used to treat boils

Lancing(slice open) the boil was more popular in
ancient Rome and in the West

In Year 0, Chinese farmers discovered
insecticide
Biotechnology and
           diseases
Smallpox: one of deadliest disease which killed millions
and had few effective treatments
Variolation: deliberately exposing someone uninfected to a
weakened smallpox virus to create immunity(dated back to
11th century)
Vaccine was created when Edward Jenner injected fluid
from a cowpox pustule into his gardener’s eight-year old
son(vaccination)
Vaccinations are not 100% effective as diseases can
mutate to resist vaccination(nonstable pathogens)
HIV: nonstable pathogens with very few vaccinations and
treatment
Biotechnology, Ketchup
 and Botox + Penicillin
Pasteurisation: heating of food long enough to kill
most bacteria and then cooling for preserving its
flavour
Started by Louis Pasteur, who wanted to prevent
the souring of wine and beer
Botox: Poison paralysing toxin from bacteria to
treat wrinkles, sweaty armpits etc
Penicillin: discovered accidentally when
Alexander Felming left bacteria growing in petri
dishes
Biotechnology and DNA
Structure: strands of DNA forms double helix,
connected by nucleic acids/bases/necleotides

Base pair: adenine+thymine, guanine+cytosine

Genes are combinations of
3 nucleotides, chromosomes are
longer chains

Proteins as building materials

Produced in ribosomes
Transcription & Translation
 Forming a protein
 1. Gene transcribed
 2. Translated into amino acids
 Exons(coding genes) form only 2% of genes
 Junk DNA
 Alleles: dominant and recessive traits
 Homozygous(homo – same) heterozygous
 Punnett Square
Genes: Mutation
Mutation: unplanned changes in genes
Mutagenic factors: radiation, chemicals in environment
Recombinant DNA technology: transferring genetic
material through transformation(eg, gene gun)
Result: transgenic organisms
Mutation: use of restriction endonucleases(enzymes) and
phage
Restriction endonucleases: selecting and cutting of specific
points, ligase to combine the two ends back
together(scissors+glue)
Phages: construct viruses to carry DNA from one cell to
another(transduction), may cause insertional mutation
Insulin, MALE
INFERIORITYYYYYYYY
                    :D level
 Hormone that regulates sugar

Animal(pancreatic glands of pigs and cows),
human(bacteria) and plant(safflower) insulin

X(smaller, carries few genes) and Y chromosome

Other X chromosome can backup should the first
X chromosome be defective, Y chromosome
cannot backup
Modifications of body
Organ transplant: 1st successful from Ronald Herrick to
Richard Herrick(twins)
Immune system treat them as foreign bodies and rejects,
thus the need for immunosuppressant drugs
Disadvantage: daily consummation of drugs, limit body’s
ability to fight actual infections
Xenotransplantation: using organs from other species
Artificial organs: ventricular assist device, Jarvik-7 in 1982,
but it causes blood clots
Newer artificial hearts adjust to user’s needs
Cosmetic surgery: inject artificial “fillers” in cheeks and lips
to make up for lost collagen
Anti-Depressants,
    Narcolepsy & ADHD
Mood depends on levels of neurotransmitters

Low levels of serotonin linked with depression

Selective serotonin reuptake inhibitors, eg Prozac, help to keep
more serotonin in the brain

Oxytocin: hormone linked with feelings of affection and
loyalty(when women give birth)

Narcolepsy: unable to keep one from falling asleep during the day,
even when well-rested

ADHD: Attention deficit hyperactivity disorder

Modafinil: stimulant(not as effective as Ritalin and Adderall)

Ritalin and Adderall: central nervous system stimulants(similar to
drugs)

Boosts amount of neorutransmitters norepinephrine & dopamine
Stem cells
Undifferentiated, able to become any type of cell(valuable
resource)
Ability to renew themselves indefinitely
Can be directed to grow into organs for transplants
Disadvantage: prone to mutations
Pluripotent stem cells: most useful, able to become any
tissue in the body
Multipotent stem cells: inactive until repairing/replacing
damaged cells, undifferentiated but only within a related
group
Unipotent stem cells: differentiated, can only be one cell
Reproduction
Fertility drugs boost production of ova

In vitro fertilisation: extracted eggs are fertilised
outside female body with sperm before
implanting developing embryos into uterus

Preimplantation genetic diagnosis(PGD) to
assess risk of genetic diseases and traits
Prosthetics & Cancer
Reattached limbs rarely regain all functions
Researchers developing ways to tie prosthetics to
body’s nerves, control artificial limb through thoughts
Scientists researching blastema from salamanders, a
clump of cells which contain a protein, EV15, which
stops cells from reproducing until they can
differentiate
Most cancer treatments take out both good and bad
cells(eg, hurting hair follicles)
Cancer cells present themselves as parts of the body,
antigens(foreign substances) are accepted as self-
antigens
Vaccines and antivirals
Asian pop. Lack enzyme aldehyde dehydrogenase which
helps body to break down alcohol(causes drinker to suffer
hangover while drinking)
Antibodies from vaccines bind to drug molecules, making
them too large to cross blood-brain barrier, thus user
cannot be high
Antiviral drugs interfere with viruses’ development,
targetting virus-associated proteins(VAPs)
Either mimic proteins and bind to receptors, or vice-versa
Or interfere with viral synthesis by developing
analogues(compounds with similar molecular structures)
that look like pieces of viral genetic material
Or synthesize interferons, the body’s natural defense
against viruses(travelling from infected cells and producing
proteins to inhibit growth of virus)
Oops, I forgot, mighty
     mice, genes
aCaMKII, memory-erasing protein

Myostatin: inhibits muscle growth by binding to
special receptors on muscle cells

Follistatin: binds to myostatin and stops it from
acting

More follistatin=more muscles

Gene therapy for single mutated gene diseases
Cloning
    Twins show effects of epigenetic changes(physical differences
    in expression of genes), eg environment of mother’s womb

    Telomeres sit at end of DNA strands to hold it together

    Cells divide=telomeres shrink

    As humans age, telomeres shrink and

damage genetic material

•   Cancerous cells produce telomerase

Which lengthens telomeres and prevent cells

From dying
Some terms
Huamn Growth Hormone(HGH): hormone that
regulates growht

Amphetamines: drugs that speed up body’s and
brain’s response time

Oxycontin: powerful painkillers

Drugs have severe side effects: steroids weaken
heart, amphetamines raise blood pressure

Nutraceuticals: food products which claim to improve
health
GMOs
Genetically modified organisms(GMOs) were first used to
improve growing of crops, eg soybeans

Soybeans vulnerable to weeds, traditional herbicides not very
effective

In 1970, glyphosate(used in herbicide RoundUp) was
discovered

It competes with and inhibits a key enzyme in growing plants,
prevents binding to normal amino acid pathway and thus no
proteins=plants die

Limited to specific applications

Genes modified to make certain crops glyphosate resistant by
exposing huge amounts of e.coli bacteria to RoundUp in
bioreactor(make e.coli bateria resistant to glyphosate)

Transgene inserted into crops for resistence
Pesticide, Flavr Savr and
       SALMON<3
Bt-toxin inserted into potato, corn and cotton
plants(transgenic)

 Flavr Savr tomatos: genetically enhanced skin
that soften slowly=long shelf life, but not firmer

AquaAdvantage Salmon: modified with gene that
makes it grow 2x faster than normal salmon

May lead to loss of generic diversity
Biofortified foods
Biofortification: engineering simple and inexpensive foods
to be more nutritious
Eg, rice, peanut paste
Golden rice: rice that produces edible beta-
carotene(vitamin A) 20x more(gene found in maize)
Reduce generic diversity
Plumpy’nut: sweet peanut paste with protein, vitamins and
minerals(500 calories)
No water, no preparation, shelf life=2 years
Made with vegetable oil which shielded nutrients from
oxygen and humidity and flavour
Expensive( 1month=60USD)
Biotechnology
Compare DNA of suspects using variable
number tandem repeat(VNTR): short pieces of
noncoding DNA that repeat in a given genome,
unique for every individual

DNA fingerprinting: high success rate and low
false-positive rate

CSI NY <3 
Biological Welfare(ohmy:o)
Mailed letters infected with bacteria anthrax to government
officials(2001)

Little vaccine at that time, anthrax=rare

Only a small number of pathogens can wipe out an entire population

Factor of deadliness: incubation period

Anthrax, botulism, plague, smallpox, tularemia, viral hemorrhagic
fevers, eg Ebola

Small pox=highly infectious, can cause global pandemic with
international air travel

Biological welfare targets: humans and food(food shortages can
destabilise a society, making it vulnerable for defeat)

Eg, Agent Orange, deadly herbicide during Vietname War which
destroyed enemy crops and forest cover, killed 0.5 million, caused birth
defects
MINIATURE
          FRONTIER(nano)
   Nanoscale: working with matter so tiny that they cannot be
   seen with an ordinary microscope
   Hair: 100 000 nanometers thick
   Nanobots: diameter of 100 nanometers
   Nanowires and carbon nanotubes: used in SUPER SUPER
   tiny circuits for building of tiny robots, sensors, etc
   Nanobots expected to perform miracles, supposedly killing
   cancerous cells, unclog arteries,perform surgery, treat
   diabetes
   Eg, Nanobots with real DNA, folded into an open
barrel shape(modeled after white blood cells)
Beating Nanowire and
  uhhum, nanobriefs
Heart attack=heart tissue dies , transplanted or
newly grown tissue would not know how to beat in
rhythm
Solution 1. inject stem cells into damaged regions,
coax them to grow heart tissues that responds like
orginal
Solution 2. nanopatches with gold nanowires that are
placed over damaged portions of heart.
Nanowires(alginate) conduct electricity. New tissue
grown around the nanopatches can respond to
electrical signals
Nanobriefs: underwear with sensors to analyse for
body changes and abnormalites
Nanobiotics
    Nanobots: made of diamond or DNA, can be very precise
    to search and destroy/repair selected cells
    Nanoparticles: tiny biodegradable particles that locate
    target bacteria and attract antibiotics
    Drill entrances through bacterial cell membranes, attracting
    and assisting antibotics(defense against antibotics depend
    on developing hard-to-penetrate cell membranes)
    Carbon nanotube circuit: sth like
synapse in human brain(junction between
neurons)
o   Nano-electrodes coated with membrane that
acts like receptor protein(glutamate) to help
control brain activity
END OF
BIOTECH
NOTES


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WSC Biotech 2012

  • 2. Introduction Cloning is no longer a thing of the past Biotechnology transforms us and our perspective of the world Biotechnology can inspire great controversy Bioethics: ethics of biological and medical research(researching for answers to questions asked)
  • 3. Biotechnology in the past Focused on fundamental issues: food & beverages Yeast: used by Egyptians to “leaven” bread & used by Sumerians and Babylonians for beer Domestication: the start of biotechnology in a way. Animals were selectively breed, steadily shaped to fit people’s needs(like today’s technology)
  • 4. Biotechnology in the past In ancient China, moldy soybean curds(anti- botic) were used to treat boils Lancing(slice open) the boil was more popular in ancient Rome and in the West In Year 0, Chinese farmers discovered insecticide
  • 5. Biotechnology and diseases Smallpox: one of deadliest disease which killed millions and had few effective treatments Variolation: deliberately exposing someone uninfected to a weakened smallpox virus to create immunity(dated back to 11th century) Vaccine was created when Edward Jenner injected fluid from a cowpox pustule into his gardener’s eight-year old son(vaccination) Vaccinations are not 100% effective as diseases can mutate to resist vaccination(nonstable pathogens) HIV: nonstable pathogens with very few vaccinations and treatment
  • 6. Biotechnology, Ketchup and Botox + Penicillin Pasteurisation: heating of food long enough to kill most bacteria and then cooling for preserving its flavour Started by Louis Pasteur, who wanted to prevent the souring of wine and beer Botox: Poison paralysing toxin from bacteria to treat wrinkles, sweaty armpits etc Penicillin: discovered accidentally when Alexander Felming left bacteria growing in petri dishes
  • 7. Biotechnology and DNA Structure: strands of DNA forms double helix, connected by nucleic acids/bases/necleotides Base pair: adenine+thymine, guanine+cytosine Genes are combinations of 3 nucleotides, chromosomes are longer chains Proteins as building materials Produced in ribosomes
  • 8. Transcription & Translation Forming a protein 1. Gene transcribed 2. Translated into amino acids Exons(coding genes) form only 2% of genes Junk DNA Alleles: dominant and recessive traits Homozygous(homo – same) heterozygous Punnett Square
  • 9. Genes: Mutation Mutation: unplanned changes in genes Mutagenic factors: radiation, chemicals in environment Recombinant DNA technology: transferring genetic material through transformation(eg, gene gun) Result: transgenic organisms Mutation: use of restriction endonucleases(enzymes) and phage Restriction endonucleases: selecting and cutting of specific points, ligase to combine the two ends back together(scissors+glue) Phages: construct viruses to carry DNA from one cell to another(transduction), may cause insertional mutation
  • 10. Insulin, MALE INFERIORITYYYYYYYY :D level Hormone that regulates sugar Animal(pancreatic glands of pigs and cows), human(bacteria) and plant(safflower) insulin X(smaller, carries few genes) and Y chromosome Other X chromosome can backup should the first X chromosome be defective, Y chromosome cannot backup
  • 11. Modifications of body Organ transplant: 1st successful from Ronald Herrick to Richard Herrick(twins) Immune system treat them as foreign bodies and rejects, thus the need for immunosuppressant drugs Disadvantage: daily consummation of drugs, limit body’s ability to fight actual infections Xenotransplantation: using organs from other species Artificial organs: ventricular assist device, Jarvik-7 in 1982, but it causes blood clots Newer artificial hearts adjust to user’s needs Cosmetic surgery: inject artificial “fillers” in cheeks and lips to make up for lost collagen
  • 12. Anti-Depressants, Narcolepsy & ADHD Mood depends on levels of neurotransmitters Low levels of serotonin linked with depression Selective serotonin reuptake inhibitors, eg Prozac, help to keep more serotonin in the brain Oxytocin: hormone linked with feelings of affection and loyalty(when women give birth) Narcolepsy: unable to keep one from falling asleep during the day, even when well-rested ADHD: Attention deficit hyperactivity disorder Modafinil: stimulant(not as effective as Ritalin and Adderall) Ritalin and Adderall: central nervous system stimulants(similar to drugs) Boosts amount of neorutransmitters norepinephrine & dopamine
  • 13. Stem cells Undifferentiated, able to become any type of cell(valuable resource) Ability to renew themselves indefinitely Can be directed to grow into organs for transplants Disadvantage: prone to mutations Pluripotent stem cells: most useful, able to become any tissue in the body Multipotent stem cells: inactive until repairing/replacing damaged cells, undifferentiated but only within a related group Unipotent stem cells: differentiated, can only be one cell
  • 14. Reproduction Fertility drugs boost production of ova In vitro fertilisation: extracted eggs are fertilised outside female body with sperm before implanting developing embryos into uterus Preimplantation genetic diagnosis(PGD) to assess risk of genetic diseases and traits
  • 15. Prosthetics & Cancer Reattached limbs rarely regain all functions Researchers developing ways to tie prosthetics to body’s nerves, control artificial limb through thoughts Scientists researching blastema from salamanders, a clump of cells which contain a protein, EV15, which stops cells from reproducing until they can differentiate Most cancer treatments take out both good and bad cells(eg, hurting hair follicles) Cancer cells present themselves as parts of the body, antigens(foreign substances) are accepted as self- antigens
  • 16. Vaccines and antivirals Asian pop. Lack enzyme aldehyde dehydrogenase which helps body to break down alcohol(causes drinker to suffer hangover while drinking) Antibodies from vaccines bind to drug molecules, making them too large to cross blood-brain barrier, thus user cannot be high Antiviral drugs interfere with viruses’ development, targetting virus-associated proteins(VAPs) Either mimic proteins and bind to receptors, or vice-versa Or interfere with viral synthesis by developing analogues(compounds with similar molecular structures) that look like pieces of viral genetic material Or synthesize interferons, the body’s natural defense against viruses(travelling from infected cells and producing proteins to inhibit growth of virus)
  • 17. Oops, I forgot, mighty mice, genes aCaMKII, memory-erasing protein Myostatin: inhibits muscle growth by binding to special receptors on muscle cells Follistatin: binds to myostatin and stops it from acting More follistatin=more muscles Gene therapy for single mutated gene diseases
  • 18. Cloning Twins show effects of epigenetic changes(physical differences in expression of genes), eg environment of mother’s womb Telomeres sit at end of DNA strands to hold it together Cells divide=telomeres shrink As humans age, telomeres shrink and damage genetic material • Cancerous cells produce telomerase Which lengthens telomeres and prevent cells From dying
  • 19. Some terms Huamn Growth Hormone(HGH): hormone that regulates growht Amphetamines: drugs that speed up body’s and brain’s response time Oxycontin: powerful painkillers Drugs have severe side effects: steroids weaken heart, amphetamines raise blood pressure Nutraceuticals: food products which claim to improve health
  • 20. GMOs Genetically modified organisms(GMOs) were first used to improve growing of crops, eg soybeans Soybeans vulnerable to weeds, traditional herbicides not very effective In 1970, glyphosate(used in herbicide RoundUp) was discovered It competes with and inhibits a key enzyme in growing plants, prevents binding to normal amino acid pathway and thus no proteins=plants die Limited to specific applications Genes modified to make certain crops glyphosate resistant by exposing huge amounts of e.coli bacteria to RoundUp in bioreactor(make e.coli bateria resistant to glyphosate) Transgene inserted into crops for resistence
  • 21. Pesticide, Flavr Savr and SALMON<3 Bt-toxin inserted into potato, corn and cotton plants(transgenic) Flavr Savr tomatos: genetically enhanced skin that soften slowly=long shelf life, but not firmer AquaAdvantage Salmon: modified with gene that makes it grow 2x faster than normal salmon May lead to loss of generic diversity
  • 22. Biofortified foods Biofortification: engineering simple and inexpensive foods to be more nutritious Eg, rice, peanut paste Golden rice: rice that produces edible beta- carotene(vitamin A) 20x more(gene found in maize) Reduce generic diversity Plumpy’nut: sweet peanut paste with protein, vitamins and minerals(500 calories) No water, no preparation, shelf life=2 years Made with vegetable oil which shielded nutrients from oxygen and humidity and flavour Expensive( 1month=60USD)
  • 23. Biotechnology Compare DNA of suspects using variable number tandem repeat(VNTR): short pieces of noncoding DNA that repeat in a given genome, unique for every individual DNA fingerprinting: high success rate and low false-positive rate CSI NY <3 
  • 24. Biological Welfare(ohmy:o) Mailed letters infected with bacteria anthrax to government officials(2001) Little vaccine at that time, anthrax=rare Only a small number of pathogens can wipe out an entire population Factor of deadliness: incubation period Anthrax, botulism, plague, smallpox, tularemia, viral hemorrhagic fevers, eg Ebola Small pox=highly infectious, can cause global pandemic with international air travel Biological welfare targets: humans and food(food shortages can destabilise a society, making it vulnerable for defeat) Eg, Agent Orange, deadly herbicide during Vietname War which destroyed enemy crops and forest cover, killed 0.5 million, caused birth defects
  • 25. MINIATURE FRONTIER(nano) Nanoscale: working with matter so tiny that they cannot be seen with an ordinary microscope Hair: 100 000 nanometers thick Nanobots: diameter of 100 nanometers Nanowires and carbon nanotubes: used in SUPER SUPER tiny circuits for building of tiny robots, sensors, etc Nanobots expected to perform miracles, supposedly killing cancerous cells, unclog arteries,perform surgery, treat diabetes Eg, Nanobots with real DNA, folded into an open barrel shape(modeled after white blood cells)
  • 26. Beating Nanowire and uhhum, nanobriefs Heart attack=heart tissue dies , transplanted or newly grown tissue would not know how to beat in rhythm Solution 1. inject stem cells into damaged regions, coax them to grow heart tissues that responds like orginal Solution 2. nanopatches with gold nanowires that are placed over damaged portions of heart. Nanowires(alginate) conduct electricity. New tissue grown around the nanopatches can respond to electrical signals Nanobriefs: underwear with sensors to analyse for body changes and abnormalites
  • 27. Nanobiotics Nanobots: made of diamond or DNA, can be very precise to search and destroy/repair selected cells Nanoparticles: tiny biodegradable particles that locate target bacteria and attract antibiotics Drill entrances through bacterial cell membranes, attracting and assisting antibotics(defense against antibotics depend on developing hard-to-penetrate cell membranes) Carbon nanotube circuit: sth like synapse in human brain(junction between neurons) o Nano-electrodes coated with membrane that acts like receptor protein(glutamate) to help control brain activity