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Introduction to Bioinformatics
QUIZ
Dr. Etienne Z. GNIMPIEBA
1
Summary
1. Bioinformatics fundamentals
2. Career
3. Applications
2
1. Bioinformatics fundamentals
Quiz
3
“Biotechnology is Any technological application that
uses________________, living organisms, or derivatives thereof, to make or
modify products or processes for specific use.”
Clinics
SB QUIZ
Q10
Computer Science
Economy
Biological Systems
Statistics
4
Fill the blank box in the figure
Systems Biology
SB QUIZ
Q11
Biotechnology
Bioinformatics
Chemistry
Agriculture
5
What is Bioinformatics?
Computer science applications for
biology
SB QUIZ
Q13
Biology and Informatics
Biotechnology subdomain
All of the above
None
6
What does this image
represent?
SB QUIZ
Q14
Protein Model
Interactions of approximately 70
metabolites
Interactions of approximately 100
7
Bioinformatics challenges are:
Development of new research interest on DNA
SB QUIZ
Q15
Accumulating mass of data
Biological systems complexity
All of the above
8
Which gives a correct list of
bioinformatics' topics
Computational biology, economy, molecular
evolution
SB QUIZ
Q16
Genome sequence, protein
sequence, autonomyGenome sequence, protein
sequence, database
Biotechnology, computer science
None
9
What is central molecular
dogma?
An enzyme mechanism
SB QUIZ
Q17
An explanation of the flow of genetic information
within a biological system
Biological system method
The cells found in the hollow part of some
bones
10
2. Bioinformatics Applications
Quiz
11
What is the goal of
Bioinformatics?
To make models
SB QUIZ
Q20
To help Biologist’s with their
research
To make processing tools
Connect the core uses and tools with the surrounding
disciplines.
To close the gap between biology and computer
12
CORE
Tool
s
Tools
Tool
s
ToolsTools
Tools
Tool
s
Tool
s
Ad Hoc Interface
Ad Hoc Interface
AdHocInterface
AdHocInterface
Biology
Computer
Science
Molecular
Nutrition
Pharma-
cology
MedicineEcology
What is Data Manipulation?
The storage of information
SB QUIZ
Q21
The collection of information
The analysis of information
The creation of information
All of the above
13
Which of these is an example of a
Data Manipulation tool?
BioExtract Server
SB QUIZ
Q22
KEGG
BRENDA
Virtual Cell
DNA Microarray
14
Which of these is an example of a
Data Manipulation tool?
SB QUIZ
Q23
An example of a data manipulation
model
Model demonstrating how to
perform a PCR
Methods for solving complex systems biology
questions
Model demonstrating how to perform a DNA Microarray
15
Biological question
Differentially expressed genes
Sample class prediction etc.
Testing
Biological verification
and interpretation
Microarray experiment
Estimation
Experimental design
Image analysis
Normalization
Clustering Discrimination
What are the two origins for
models in Bioinformatics?
SB QUIZ
Q24
Analyzing data, or analyzing systems and
interactions
Analyzing data, or PCR testing
Analyzing systems, or interactions, or lab experiments
Analyzing Systems Biology processes, or lab
experiments 16
The E Cell is an example of
what?
A Google App Tool
SB QUIZ
Q25
Data Manipulation
Tool
Bioinformatics Model
Another subset of the Virtual Cell
A helpful learning image
17
What does this model
represent?
HIV Spread
SB QUIZ
Q26
Cancer Tumor
Flu Spread
Google Body Browser App
18
3. Bioinformatics Career Quiz
19
Who can become a
bioinformatician?
Anyone who has graduated high school
SB QUIZ
Q30
Someone with an initial background in Biology
Someone with an initial background in Computer
Science
Both above answers
Anyone who has graduated college
20
Where can someone find a
Bioinformatics Job?
All of the above
SB QUIZ
Q31
State and Federal Agencies
Research Institutions
Universities
Pharmaceutical Companies
21
What does a bioinformatician
do?
All of the above
SB QUIZ
Q32
Modeling and simulation
Pharmacogenomics
Sequence Assembly
DNA computing
22
What skill does someone NOT
need to become a
bioinformatician?
Skills for data analysis, storage, and retrieval
SB QUIZ
Q33
How to perform DNA Microarrays and PCRs
23
Database administration and programming skills
Biologist and computers scientists
Genomic sequence analysis
What does this image
represent?
None of the above
SB QUIZ
Q34
Data Manipulation
Tool
An example of a
Bioinformatics Model
The different bioinformatics careers
24
• Cloud
• Databank
• Database
• Data designer
• Information manipulation
• Create/collect information
• Statistic analysis
• Date inference, learning
• Model from data
• Model from SB
• Large scale model
Modeling & learning SB
Informatics
Data manipulation
Bio/life

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Brin bws13 quiz mmc

  • 2. Summary 1. Bioinformatics fundamentals 2. Career 3. Applications 2
  • 4. “Biotechnology is Any technological application that uses________________, living organisms, or derivatives thereof, to make or modify products or processes for specific use.” Clinics SB QUIZ Q10 Computer Science Economy Biological Systems Statistics 4
  • 5. Fill the blank box in the figure Systems Biology SB QUIZ Q11 Biotechnology Bioinformatics Chemistry Agriculture 5
  • 6. What is Bioinformatics? Computer science applications for biology SB QUIZ Q13 Biology and Informatics Biotechnology subdomain All of the above None 6
  • 7. What does this image represent? SB QUIZ Q14 Protein Model Interactions of approximately 70 metabolites Interactions of approximately 100 7
  • 8. Bioinformatics challenges are: Development of new research interest on DNA SB QUIZ Q15 Accumulating mass of data Biological systems complexity All of the above 8
  • 9. Which gives a correct list of bioinformatics' topics Computational biology, economy, molecular evolution SB QUIZ Q16 Genome sequence, protein sequence, autonomyGenome sequence, protein sequence, database Biotechnology, computer science None 9
  • 10. What is central molecular dogma? An enzyme mechanism SB QUIZ Q17 An explanation of the flow of genetic information within a biological system Biological system method The cells found in the hollow part of some bones 10
  • 12. What is the goal of Bioinformatics? To make models SB QUIZ Q20 To help Biologist’s with their research To make processing tools Connect the core uses and tools with the surrounding disciplines. To close the gap between biology and computer 12 CORE Tool s Tools Tool s ToolsTools Tools Tool s Tool s Ad Hoc Interface Ad Hoc Interface AdHocInterface AdHocInterface Biology Computer Science Molecular Nutrition Pharma- cology MedicineEcology
  • 13. What is Data Manipulation? The storage of information SB QUIZ Q21 The collection of information The analysis of information The creation of information All of the above 13
  • 14. Which of these is an example of a Data Manipulation tool? BioExtract Server SB QUIZ Q22 KEGG BRENDA Virtual Cell DNA Microarray 14
  • 15. Which of these is an example of a Data Manipulation tool? SB QUIZ Q23 An example of a data manipulation model Model demonstrating how to perform a PCR Methods for solving complex systems biology questions Model demonstrating how to perform a DNA Microarray 15 Biological question Differentially expressed genes Sample class prediction etc. Testing Biological verification and interpretation Microarray experiment Estimation Experimental design Image analysis Normalization Clustering Discrimination
  • 16. What are the two origins for models in Bioinformatics? SB QUIZ Q24 Analyzing data, or analyzing systems and interactions Analyzing data, or PCR testing Analyzing systems, or interactions, or lab experiments Analyzing Systems Biology processes, or lab experiments 16
  • 17. The E Cell is an example of what? A Google App Tool SB QUIZ Q25 Data Manipulation Tool Bioinformatics Model Another subset of the Virtual Cell A helpful learning image 17
  • 18. What does this model represent? HIV Spread SB QUIZ Q26 Cancer Tumor Flu Spread Google Body Browser App 18
  • 20. Who can become a bioinformatician? Anyone who has graduated high school SB QUIZ Q30 Someone with an initial background in Biology Someone with an initial background in Computer Science Both above answers Anyone who has graduated college 20
  • 21. Where can someone find a Bioinformatics Job? All of the above SB QUIZ Q31 State and Federal Agencies Research Institutions Universities Pharmaceutical Companies 21
  • 22. What does a bioinformatician do? All of the above SB QUIZ Q32 Modeling and simulation Pharmacogenomics Sequence Assembly DNA computing 22
  • 23. What skill does someone NOT need to become a bioinformatician? Skills for data analysis, storage, and retrieval SB QUIZ Q33 How to perform DNA Microarrays and PCRs 23 Database administration and programming skills Biologist and computers scientists Genomic sequence analysis
  • 24. What does this image represent? None of the above SB QUIZ Q34 Data Manipulation Tool An example of a Bioinformatics Model The different bioinformatics careers 24 • Cloud • Databank • Database • Data designer • Information manipulation • Create/collect information • Statistic analysis • Date inference, learning • Model from data • Model from SB • Large scale model Modeling & learning SB Informatics Data manipulation Bio/life