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Cryptic surgeonfish species:
Phylogeographic survey reveals hidden
   biodiversity in the Pacific Ocean




J. DiBattista, C. Wilcox, M. Craig, L. Rocha, and B. Bowen
 Hawai’i Institute of Marine Biology, University of Hawaii
Genetic connectivity of reef fish

        Most have high dispersal potential:
        - pelagic larvae (weeks to months)
Genetic connectivity of reef fish

        Most have high dispersal potential:
        - pelagic larvae (weeks to months)

        Direct tagging logistically difficult:
         Molecular tools important here
Genetic connectivity of reef fish

        Most have high dispersal potential:
        - pelagic larvae (weeks to months)

        Direct tagging logistically difficult:
         Molecular tools important here

        Scale of dispersal fundamental for:
        - defining management units
        - designing marine reserves (MPAs)
        - Identifying sources versus sinks
Phylogeography of Indo-Pacific reef fish
                               OK
                                                               HI


                                                          JO
                                         MA
                                    PN                         KI


                                              KA    TI
     SE        DG
                                                     AS   MO
                          CM                                        MA
                                               FJ
Reef fish families   CC
 Acanthuridae
Chaetodontidae
   Labridae
   Lutjanidae
    Mullidae
 Pomacanthidae
   Serranidae
Phylogeography of Indo-Pacific reef fish
                               OK
                                                               HI
                           Hawaiian archipelago
                                                          JO
                                         MA
                                    PN                         KI


                                              KA    TI
     SE        DG
                                                     AS   MO
                          CM                                        MA
                                               FJ
Reef fish families   CC
 Acanthuridae
Chaetodontidae
   Labridae
   Lutjanidae
    Mullidae
 Pomacanthidae
   Serranidae
Hawaiian archipelago
   25% endemism (Randall 2007)
One of the most isolated in the Pacific
Papahā naumokuā kea
    Marine National Monument


             ?




                  ?



One of the largest marine conservation areas in the world
Bluelined Surgeonfish
(Acanthurus nigroris)


       ‱ Reef generalist/herbivore
       ‱ 542 specimens collected
          2004 to 2007
       ‱ 18 locations sampled
          Hawaii and Pacific islands
       ‱ mtDNA, cytochrome b
Pacific locations
                                                                  Hawaiian Locations




                                   N = 98
                                    Marshall Islands
                                      (N = 19, MI)
                                                       Christmas Island
                                                            Kiribati
                                                          (N = 24, KI)




                                                 American Samoa
                                                   (N = 23, AS)
                                                                      Moorea
                                                                    (N = 32, MO)




Photo by Jerker Tamelander, IUCN
Hawaiian locations
                     N = 445
          Midway (N = 30)

                     Pearl & Hermes (N = 29)
Kure (N = 41)

          Lisianski
          (N = 39)                              Gardner               Main Hawaiian Islands (MHI)
                   Laysan                       (N = 27)
                   (N = 46)                                                       N = 96
                              Maro Reef                       Necker Island
                               (N = 35)                          (N = 3)

                                French Frigate Shoals                           Kauai (N = 34)
                                      (N = 33)
                                                                Nihoa                    Oahu (N = 29)
                                                               (N = 32)

                                                                                Lanai
                                                                               (N = 1)
                Northwest Hawaiian Islands (NWHI)
                                   N = 315                                        Hawaii
                                                                                 (N = 32)
                                             Johnston Atoll
                                                 (N = 34)
Study objectives


We aim to address the following questions:

(1) Is there genetic structure within the Hawaiian
     archipelago?
(2) Is there genetic structure among other sampled
     Pacific populations?
(3) Is there evidence of genetic exchange between
     Hawaii and the rest of the Pacific?
Analysis of genetic structure
      1) Haplotype and nucleotide diversity
      2) Neutrality test statistics:
        Tajima’s D and Fu’s Fs
      3) Connectivity via φ ST values:
         – Between all populations
         – Between NWHI & MHI
         – Between Hawaii and Pacific
      4) mtDNA sequence divergence
      5) Mismatch distribution analysis:
          Coalescence times (from τ estimates)
      6) MIGRATE software analysis:
          number of migrants per generation
Analysis of genetic structure
      1) Haplotype and nucleotide diversity
      2) Neutrality test statistics:
        Tajima’s D and Fu’s Fs
      3) Connectivity via φ ST values:
         – Between all populations
         – Between NWHI & MHI
         – Between Hawaii and Pacific
      4) mtDNA sequence divergence
      5) Mismatch distribution analysis:
          Coalescence times (from τ estimates)
      6) MIGRATE software analysis:
          number of migrants per generation
Connectivity within Hawaiian islands


                 NO genetic structure in Hawaii

                    - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0

                - MHI vs. NWHI: φ ST = -0.002, P = 0.65

                - 38 haplotypes (HAP 1 + 2 every site)

                - mtDNA sequence divergence= 0.1%
Connectivity within Hawaiian islands


        φ ST = 0.01, P = 0.07 NO genetic structure in Hawaii

                             - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0

                         - MHI vs. NWHI: φ ST = -0.002, P = 0.65

                         - 38 haplotypes (HAP 1 + 2 every site)

                         - mtDNA sequence divergence= 0.1%
Connectivity within Hawaiian islands


       φ ST = -0.002, P = 0.65 NO genetic structure in Hawaii

                              - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0

                          - MHI vs. NWHI: φ ST = -0.002, P = 0.65

                          - 38 haplotypes (HAP 1 + 2 every site)

                          - mtDNA sequence divergence= 0.1%
Connectivity within Hawaiian islands


                           NO genetic structure in Hawaii
             Nm = 22.99
                              - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0

                          - MHI vs. NWHI: φ ST = -0.002, P = 0.65

                      - 38 haplotypes (HAP 1 + 2 every site)

                      - mtDNA sequence divergence= 0.1%


                          Number of migrants/generation:

                      From NWHI into MHI = 22.99 (0 to 132)
Nm = 35.19            From MHI into NWHI = 35.19 (0 to 162)
Direction of exchange appears primarily
   to the NW rather than SE in Hawaii
Connectivity within Pacific islands


                                  NO genetic structure in Pacific

                  MI                   - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18

                                  - 5 8 h a p lo t y p e s ( m a n y s in g le t o
                             KI
                        AS        - mtDNA sequence divergence = 0.6%

                                  MO


MI = Marshall Islands
AS = American Samoa
KI = Kiribati
MO = Moorea
Connectivity within Pacific islands


                 φ ST = 0.009, P = 0.18 genetic structure in Pacific
                                    NO

                  MI                    - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18

                                   - 5 8 h a p lo t y p e s ( m a n y s in g le t o
                              KI
                        AS         - mtDNA sequence divergence = 0.6%

                                   MO


MI = Marshall Islands
AS = American Samoa
KI = Kiribati
MO = Moorea
Connectivity within Pacific islands


                 φ ST = 0.009, P = 0.18 genetic structure in Pacific
                                    NO

                  MI                    - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18

                                   - 5 8 h a p lo t y p e s ( m a n y s in g le t o
                              KI
                        AS         - mtDNA sequence divergence = 0.6%

                                   MO
                                   Number of migrants/generation:
MI = Marshall Islands
                                   Mean migration rate within Pacific
AS = American Samoa
KI = Kiribati                      = 13.36 (0 to 66 CI)
MO = Moorea
                                   NO BIAS IN MIGRATION DIRECTION
Connectivity between Pacific regions

                        Hawaii
                        Oahu
                        Lanai
                        Kauai
                        Nihoa
                        Necker
                        French Frigate Shoals
 Hawaiian Archipelago   Gardner Pinnacles
                        Maro Reef
                        Laysan
                        Lisianski
                        Pearl & Hermes Atoll
                        Midway
                        Kure                     ns
                                              tio
                        Johnston Atoll
                                          a
                                        ut
                                       m
                                   2 5            Marshall Islands
                                                  Moorea
                                                  Kiribati           Pacific Islands
                                                  American Samoa



                              Sequence divergence = 4.12 %
                                  φ ST = 0.96, P < 0.0001
                            (DiBattista, Wilcox et al., 2011 JMB)
Photos by Jack E. Randall




Hawaiian A. nigroris, from Oahu       Pacific A. nigroris, from Enewetak

                      Meristic Differences
                                  Hawaiian                      Pacific
Dorsal Soft Rays                  24 - 27                       23 - 26
Anal Soft Rays                    22 - 25                       22 - 24
Anterior Gill Rakers              26 - 31                       21 - 25
Posterior Gill Rakers             24 - 27                       19 - 24
                                    Randall, JE (1956), Pacific Science, 10:159-235.
Photos by Jack E. Randall




Hawaiian A. nigroris, from Oahu      Pacific A. nigroris, from Enewetak

                      Meristic Differences
                                  Hawaiian                     Pacific
Dorsal Soft Rays                  24 - 27                      23 - 26
Anal Soft Rays                    22 - 25                      22 - 24
Anterior Gill Rakers              26 - 31                      21 - 25
Posterior Gill Rakers             24 - 27                      19 - 24
                                   Randall, JE (1956), Pacific Science, 10:159-235.
Species distribution map
   Randall et al. in press, Pacific Science




                         Acanthurus nigros GĂŒnther
                         Acanthurus nigroris
Conclusions
‱ High gene flow over large distances:
   Hawaiian region: ~2600 km
   Pacific region: ~800 km


‱ Distinct barrier to gene flow between
  Hawaii and the rest of the Pacific

‱ Two proposed surgeonfish species:
   Hawaiian endemic species
   Widespread Pacific species
The bigger picture?

   Hawaiian endemics                                Widespread surgeonfish
                                                                           Eble et al. 2011:
                                                                           Indo-Pacific
                         Eble et al. 2009:          Acanthurus
                                                             nigrofuscus   Some genetic structure
                         Strong genetic structure

Ctenochaetus strigosus                                                     Eble et al. 2009:
                                                                           North/West Pacific

                                                    Zebrasoma flavescens   Some genetic structure
                         Present study:
                         No genetic structure                              Present Study:
                                                                           Central Pacific
  Acanthurus nigroris
                                                                           No genetic structure
                                                      Acanthurus nigros
Acknowledgements
Thanks to Robert Toonen and Jeff Eble for multiple contributions to this
study.
This research was supported by the National Science Foundation grants
OIA0554657, OCE-0453167 and OCE-0929031 (BWB), OCE-0623678 (RJT),
and NOAA National Marine Sanctuaries Program MOA No. 2005-008/66882
(BWB & RJT).
We thank the Papahanaumokuakea Marine National Monument and co-trustees NOAA
Marine Sanctuaries, U.S. Fish and Wildlife Service (USFWS), and the State of Hawaii.
Paul Barber, Howard Choat, Pat Collins, Greg Concepcion, Jonathan Dale, Toby Daly-
Engel, John Earle, Michelle Gaither, Brian Greene, Matt Iacchei, Stephen Karl, Randall
Kosaki, Carl Meyer, Yannis Papastamatiou, Joshua Reece, Jennifer Schultz, Zoltan
Szabo, Tonatiuh Trejo-Cantwell, Jill Zamzow, and the crew of the R.V. Hi’ialakai
helped collect specimens. Aulani Wilhelm, Jo-Ann Leong, Hoku Johnson, Danielle
Carter, Daniel Polhemus, Randall Kosaki, Ann Mooney, Elizabeth Keenen, Kelly
Gleason, James Maragos, and the Coral Reef Research Foundation provided crucial
logistic assistance to this project. We thank Zoltan Szabo for valuable laboratory
assistance and protocol development, Sarah Daley, Rajesh Shrestha and Mindy
Mizobe of the HIMB EPSCoR core facility for their assistance with DNA sequencing,
John Randall, Stephen Karl, and all the members of the ToBo lab for their advice,
assistance, and support.

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Hidden in plain view: A genetic survey reveals high connectivity and a cryptic endemic surgeonfish species in the Hawaiian Archipelago

  • 1. Cryptic surgeonfish species: Phylogeographic survey reveals hidden biodiversity in the Pacific Ocean J. DiBattista, C. Wilcox, M. Craig, L. Rocha, and B. Bowen Hawai’i Institute of Marine Biology, University of Hawaii
  • 2. Genetic connectivity of reef fish Most have high dispersal potential: - pelagic larvae (weeks to months)
  • 3. Genetic connectivity of reef fish Most have high dispersal potential: - pelagic larvae (weeks to months) Direct tagging logistically difficult:  Molecular tools important here
  • 4. Genetic connectivity of reef fish Most have high dispersal potential: - pelagic larvae (weeks to months) Direct tagging logistically difficult:  Molecular tools important here Scale of dispersal fundamental for: - defining management units - designing marine reserves (MPAs) - Identifying sources versus sinks
  • 5. Phylogeography of Indo-Pacific reef fish OK HI JO MA PN KI KA TI SE DG AS MO CM MA FJ Reef fish families CC Acanthuridae Chaetodontidae Labridae Lutjanidae Mullidae Pomacanthidae Serranidae
  • 6. Phylogeography of Indo-Pacific reef fish OK HI Hawaiian archipelago JO MA PN KI KA TI SE DG AS MO CM MA FJ Reef fish families CC Acanthuridae Chaetodontidae Labridae Lutjanidae Mullidae Pomacanthidae Serranidae
  • 7. Hawaiian archipelago 25% endemism (Randall 2007) One of the most isolated in the Pacific
  • 8. Papahā naumokuā kea Marine National Monument ? ? One of the largest marine conservation areas in the world
  • 9. Bluelined Surgeonfish (Acanthurus nigroris) ‱ Reef generalist/herbivore ‱ 542 specimens collected  2004 to 2007 ‱ 18 locations sampled  Hawaii and Pacific islands ‱ mtDNA, cytochrome b
  • 10. Pacific locations Hawaiian Locations N = 98 Marshall Islands (N = 19, MI) Christmas Island Kiribati (N = 24, KI) American Samoa (N = 23, AS) Moorea (N = 32, MO) Photo by Jerker Tamelander, IUCN
  • 11. Hawaiian locations N = 445 Midway (N = 30) Pearl & Hermes (N = 29) Kure (N = 41) Lisianski (N = 39) Gardner Main Hawaiian Islands (MHI) Laysan (N = 27) (N = 46) N = 96 Maro Reef Necker Island (N = 35) (N = 3) French Frigate Shoals Kauai (N = 34) (N = 33) Nihoa Oahu (N = 29) (N = 32) Lanai (N = 1) Northwest Hawaiian Islands (NWHI) N = 315 Hawaii (N = 32) Johnston Atoll (N = 34)
  • 12. Study objectives We aim to address the following questions: (1) Is there genetic structure within the Hawaiian archipelago? (2) Is there genetic structure among other sampled Pacific populations? (3) Is there evidence of genetic exchange between Hawaii and the rest of the Pacific?
  • 13. Analysis of genetic structure 1) Haplotype and nucleotide diversity 2) Neutrality test statistics: Tajima’s D and Fu’s Fs 3) Connectivity via φ ST values: – Between all populations – Between NWHI & MHI – Between Hawaii and Pacific 4) mtDNA sequence divergence 5) Mismatch distribution analysis:  Coalescence times (from τ estimates) 6) MIGRATE software analysis:  number of migrants per generation
  • 14. Analysis of genetic structure 1) Haplotype and nucleotide diversity 2) Neutrality test statistics: Tajima’s D and Fu’s Fs 3) Connectivity via φ ST values: – Between all populations – Between NWHI & MHI – Between Hawaii and Pacific 4) mtDNA sequence divergence 5) Mismatch distribution analysis:  Coalescence times (from τ estimates) 6) MIGRATE software analysis:  number of migrants per generation
  • 15. Connectivity within Hawaiian islands NO genetic structure in Hawaii - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0 - MHI vs. NWHI: φ ST = -0.002, P = 0.65 - 38 haplotypes (HAP 1 + 2 every site) - mtDNA sequence divergence= 0.1%
  • 16. Connectivity within Hawaiian islands φ ST = 0.01, P = 0.07 NO genetic structure in Hawaii - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0 - MHI vs. NWHI: φ ST = -0.002, P = 0.65 - 38 haplotypes (HAP 1 + 2 every site) - mtDNA sequence divergence= 0.1%
  • 17. Connectivity within Hawaiian islands φ ST = -0.002, P = 0.65 NO genetic structure in Hawaii - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0 - MHI vs. NWHI: φ ST = -0.002, P = 0.65 - 38 haplotypes (HAP 1 + 2 every site) - mtDNA sequence divergence= 0.1%
  • 18. Connectivity within Hawaiian islands NO genetic structure in Hawaii Nm = 22.99 - O v e r a l l : φ S T = 0 . 0 1, P = 0 . 0 - MHI vs. NWHI: φ ST = -0.002, P = 0.65 - 38 haplotypes (HAP 1 + 2 every site) - mtDNA sequence divergence= 0.1% Number of migrants/generation: From NWHI into MHI = 22.99 (0 to 132) Nm = 35.19 From MHI into NWHI = 35.19 (0 to 162)
  • 19. Direction of exchange appears primarily to the NW rather than SE in Hawaii
  • 20. Connectivity within Pacific islands NO genetic structure in Pacific MI - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18 - 5 8 h a p lo t y p e s ( m a n y s in g le t o KI AS - mtDNA sequence divergence = 0.6% MO MI = Marshall Islands AS = American Samoa KI = Kiribati MO = Moorea
  • 21. Connectivity within Pacific islands φ ST = 0.009, P = 0.18 genetic structure in Pacific NO MI - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18 - 5 8 h a p lo t y p e s ( m a n y s in g le t o KI AS - mtDNA sequence divergence = 0.6% MO MI = Marshall Islands AS = American Samoa KI = Kiribati MO = Moorea
  • 22. Connectivity within Pacific islands φ ST = 0.009, P = 0.18 genetic structure in Pacific NO MI - O v e r a l l : φ S T = 0 . 0 0 9 , P = 0 . 18 - 5 8 h a p lo t y p e s ( m a n y s in g le t o KI AS - mtDNA sequence divergence = 0.6% MO Number of migrants/generation: MI = Marshall Islands Mean migration rate within Pacific AS = American Samoa KI = Kiribati = 13.36 (0 to 66 CI) MO = Moorea NO BIAS IN MIGRATION DIRECTION
  • 23. Connectivity between Pacific regions Hawaii Oahu Lanai Kauai Nihoa Necker French Frigate Shoals Hawaiian Archipelago Gardner Pinnacles Maro Reef Laysan Lisianski Pearl & Hermes Atoll Midway Kure ns tio Johnston Atoll a ut m 2 5 Marshall Islands Moorea Kiribati Pacific Islands American Samoa Sequence divergence = 4.12 % φ ST = 0.96, P < 0.0001 (DiBattista, Wilcox et al., 2011 JMB)
  • 24. Photos by Jack E. Randall Hawaiian A. nigroris, from Oahu Pacific A. nigroris, from Enewetak Meristic Differences Hawaiian Pacific Dorsal Soft Rays 24 - 27 23 - 26 Anal Soft Rays 22 - 25 22 - 24 Anterior Gill Rakers 26 - 31 21 - 25 Posterior Gill Rakers 24 - 27 19 - 24 Randall, JE (1956), Pacific Science, 10:159-235.
  • 25. Photos by Jack E. Randall Hawaiian A. nigroris, from Oahu Pacific A. nigroris, from Enewetak Meristic Differences Hawaiian Pacific Dorsal Soft Rays 24 - 27 23 - 26 Anal Soft Rays 22 - 25 22 - 24 Anterior Gill Rakers 26 - 31 21 - 25 Posterior Gill Rakers 24 - 27 19 - 24 Randall, JE (1956), Pacific Science, 10:159-235.
  • 26. Species distribution map Randall et al. in press, Pacific Science Acanthurus nigros GĂŒnther Acanthurus nigroris
  • 27. Conclusions ‱ High gene flow over large distances:  Hawaiian region: ~2600 km  Pacific region: ~800 km ‱ Distinct barrier to gene flow between Hawaii and the rest of the Pacific ‱ Two proposed surgeonfish species:  Hawaiian endemic species  Widespread Pacific species
  • 28. The bigger picture? Hawaiian endemics Widespread surgeonfish Eble et al. 2011: Indo-Pacific Eble et al. 2009: Acanthurus nigrofuscus Some genetic structure Strong genetic structure Ctenochaetus strigosus Eble et al. 2009: North/West Pacific Zebrasoma flavescens Some genetic structure Present study: No genetic structure Present Study: Central Pacific Acanthurus nigroris No genetic structure Acanthurus nigros
  • 29. Acknowledgements Thanks to Robert Toonen and Jeff Eble for multiple contributions to this study. This research was supported by the National Science Foundation grants OIA0554657, OCE-0453167 and OCE-0929031 (BWB), OCE-0623678 (RJT), and NOAA National Marine Sanctuaries Program MOA No. 2005-008/66882 (BWB & RJT). We thank the Papahanaumokuakea Marine National Monument and co-trustees NOAA Marine Sanctuaries, U.S. Fish and Wildlife Service (USFWS), and the State of Hawaii. Paul Barber, Howard Choat, Pat Collins, Greg Concepcion, Jonathan Dale, Toby Daly- Engel, John Earle, Michelle Gaither, Brian Greene, Matt Iacchei, Stephen Karl, Randall Kosaki, Carl Meyer, Yannis Papastamatiou, Joshua Reece, Jennifer Schultz, Zoltan Szabo, Tonatiuh Trejo-Cantwell, Jill Zamzow, and the crew of the R.V. Hi’ialakai helped collect specimens. Aulani Wilhelm, Jo-Ann Leong, Hoku Johnson, Danielle Carter, Daniel Polhemus, Randall Kosaki, Ann Mooney, Elizabeth Keenen, Kelly Gleason, James Maragos, and the Coral Reef Research Foundation provided crucial logistic assistance to this project. We thank Zoltan Szabo for valuable laboratory assistance and protocol development, Sarah Daley, Rajesh Shrestha and Mindy Mizobe of the HIMB EPSCoR core facility for their assistance with DNA sequencing, John Randall, Stephen Karl, and all the members of the ToBo lab for their advice, assistance, and support.