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Homework

Describe on one piece of paper how
       electropheresis works
      MUST: isoelectric point
             Zwitterions
   SHOULD: Buffer effect, PAGE
 COULD: Effect of bonding on pH
Task One
• Protein Structure
  – http://www.youtube.com/watch?v=lijQ3a8yUYQ

  – http://www.youtube.com/watch?v=iaHHgEoa2c8
    &NR=1
What are Proteins For ?
•   Enzymes
•   Structure to; hair, nails
•   Energy
•   Hormones, e.g. FSH – menstrual cycle
    stimulant……
Chromatography
• http://www.chemie.uni-
  regensburg.de/Organische_Chemie/Didaktik/K
  eusch/D-Fehling-e.htm
Carbohydrates
• Monosaccharides - structure
Fructose isomers
Glucose Isomers
• http://www.biotopics.co.uk/JmolApplet/alpha
  betajglucose2.html
Condensation Rxns of the
           Monosaccharides
• Formation of

  – Starch

  – Glycogen

  – Cellulose
What do Carbohydrates do for us ?
• Energy source (glucose), energy reserves
  (glycogen) and precursors for other
  biologically important molecules.
Humans can Digest Starch NOT
              Cellulose
• Both are polymers of glucose units.
• Starch has two forms: amylose, which is a
  straight-chain polymer (α-1,4 linkage), and
  amylopectin, which is a branched structure
  with both α-1,4 and α-1,6 linkages.
• Cellulose has a β-1,4 linkage; this can be
  hydrolysed by the enzyme cellulase, which is
  absent in most animals, including mammals.
Dietary Fibre
• Dietary fibre may be helpful in the prevention
  of conditions such as diverticulosis, irritable
  bowel syndrome, constipation, obesity,
  Crohn’s disease, hemorrhoids and diabetes
  mellitus.
Fehlings’ Test
Lipids
• triglycerides (fats and oils),
   – http://tinyurl.com/yda73qr



• phospholipids (lecithin)

• steroids (cholesterol )
HDL
           and LDL cholesterol
• http://www.americanheart.org/presenter.jht
  ml?identifier=180

• LDL =



• HDL =
Saturated and unsaturated
               fatty acids.
• Naturally occurring fatty acids have a mixture
  of unsaturated, saturated and
  polyunsaturated fatty acids.

• http://en.wikipedia.org/wiki/Fatty_acid
Omega-6 and omega-3 fatty acids
• Omega 6




• Omega 3
Iodine number
• The number of moles of I2 reacting with one
  mole of fat/oil indicates the number of double
  bonds present in the fat/oil molecule.
Enzyme-catalysed
        hydrolysis of triglycerides
• Ester hydrolysis to carboxylic acid + alcohol
Energy content
• Fats v Carbohydrates

• Carbs – quick rapid absorption

• Fats – slow release of energy over time, roughly
  2x the amount of energy contained in a carb

• http://www.merck.com/mmhe/sec12/ch152/ch1
  52b.html
Roles of lipids
•   energy storage
•   insulation and protection of organs
•   steroid hormones
•   structural component of cell membrane
•   omega-3 poly-unsaturated fatty acids reduce
•   the risk of heart disease
•   poly-unsaturated fats may lower levels of LDL
    cholesterol
Negative Effects
• increased risk of heart disease from elevated
  levels of LDL cholesterol and trans fatty acids;
• the major source of LDL cholesterol is
  saturated fats, in particular lauric
  (C12), myristic (C14) and palmitic (C16) acids
• obesity.
Micronutrients
• Micronutrients are substances required in
  very small amounts (mg or μg) and that
  mainly function as a co-factor of enzymes
  (<0.005% body weight).
• Examples include vitamins and trace minerals
  (Fe, Cu, F, Zn, I, Se, Mn, Mo, Cr, Co and B).
Macronutrients
• These are chemical substances that are
  required in relatively large amounts (>0.005%
  body weight).
• Examples include proteins, fats, carbohydrates
  and minerals (Na, Mg, K, Ca, P, S and Cl).
(vitamin A), calciferol (vitamin D) and
       ascorbic acid (vitamin C).
• Structural comparison
Deduce whether a vitamin is water- or
   fat-soluble from its structure.
• water-soluble—vitamins B and C



• fat-soluble—vitamins A, D, E and K.
Homework
• Discuss the causes and effects of nutrient
  deficiencies in different countries and suggest
  solutions

• (word doc)
Hormones
• Hormones are micchealmessengers. They are
  crtdeese directly into the blood by endocrine
  glands. ExampleslucenidADH, aldosterone,
  estrogen, progesterone and testosterone,
  insulin, epinephrine (adrenaline) and
  thyroxine.
The structures of cholesterol
   and the sex hormones
The mode of action of oral
     contraceptives.
The use and abuse of steroids.
Higher Level
• Enzymes
• Nucleic Acids
• Respiration

• In GREAT chemical detail 
Enzymes
• enzymes are proteins; activity depends on
  tertiary and quaternary structure; and the
  specificity of enzyme action.
Compare inorganic catalysts and
 biological catalysts (enzymes).
The relationship between
substrate concentration and enzyme
              activity.
Vmax and the value of the
Michaelis constant (Km) by graphical
               means
Mechanism of Enzyme Action
• enzyme substrate complex, active site and
  induced fit model.
Competitive inhibition and
       non-competitive inhibition
• http://en.wikipedia.org/wiki/File:Comp_inhib.
  svg
Enzyme Activity
• Effect of :-
   – Heavy metal ions

   – Temperature

   – pH

   – http://www.elmhurst.edu/~chm/vchembook/573i
     nhibit.html
Nucleic Acids
• Nucleic acids are polymers made up of nucleotides.
• A nucleotide contains a phosphate group, a pentose
  sugar and an organic nitrogenous base.
• Students should recognize, but do not need to recall,
  the structures of the five bases: adenine (A), cytosine
  (C), guanine (G), thymine (T) and uracil (U).
• Nucleic acids are joined by covalent bonds between
  the phosphate of one nucleotide and the sugar of the
  next, resulting in a backbone with a repeating pattern
  of sugar–phosphate–sugar–phosphate. Nitrogenous
  bases are attached to the sugar of the backbone.
RNA and DNA
• RNA has ribose as its pentose sugar; DNA has
  deoxyribose. Deoxyribose lacks an oxygen
  atom on C2. RNA has uracil instead of thymine
  as its base.
• RNA is a single-strand nucleic acid; DNA is a
  doublestrand nucleic acid.
DNA double helix
• The structure has two nucleic acid strands that
  spiral around an axis.

• Describe the hydrogen bonding between
  specific pairs of nucleotide bases
The role of DNA

• repository of genetic information.
• explain its role in protein synthesis……….

• DNA is the genetic material that an individual
  inherits from its parents. It directs mRNA
  synthesis (transcription) and, through mRNA,
  directs protein synthesis (translation) using a
  triplet code.
DNA Profiling
• Uses in forensic and paternity cases.
Respiration
• Aerobic and anaerobic respiration 
• In aerobic respiration, glucose is converted into
  pyruvate, which, in the presence of oxygen,
  changes to carbon dioxide and water. Overall,
  glucose undergoes oxidation and oxygen
  undergoes reduction. In anaerobic respiration,
  pyruvate is converted to lactate in human beings
  whereas yeast converts pyruvate to ethanol and
  carbon dioxide.
• Redox equations should be used.
The role of Cu
• Cytochromes



• Hemoglobin

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G12 slhl humanbio

  • 1. Homework Describe on one piece of paper how electropheresis works MUST: isoelectric point Zwitterions SHOULD: Buffer effect, PAGE COULD: Effect of bonding on pH
  • 2. Task One • Protein Structure – http://www.youtube.com/watch?v=lijQ3a8yUYQ – http://www.youtube.com/watch?v=iaHHgEoa2c8 &NR=1
  • 3.
  • 4. What are Proteins For ? • Enzymes • Structure to; hair, nails • Energy • Hormones, e.g. FSH – menstrual cycle stimulant……
  • 6. • http://www.chemie.uni- regensburg.de/Organische_Chemie/Didaktik/K eusch/D-Fehling-e.htm
  • 10. Condensation Rxns of the Monosaccharides • Formation of – Starch – Glycogen – Cellulose
  • 11. What do Carbohydrates do for us ? • Energy source (glucose), energy reserves (glycogen) and precursors for other biologically important molecules.
  • 12. Humans can Digest Starch NOT Cellulose • Both are polymers of glucose units. • Starch has two forms: amylose, which is a straight-chain polymer (α-1,4 linkage), and amylopectin, which is a branched structure with both α-1,4 and α-1,6 linkages. • Cellulose has a β-1,4 linkage; this can be hydrolysed by the enzyme cellulase, which is absent in most animals, including mammals.
  • 13. Dietary Fibre • Dietary fibre may be helpful in the prevention of conditions such as diverticulosis, irritable bowel syndrome, constipation, obesity, Crohn’s disease, hemorrhoids and diabetes mellitus.
  • 15. Lipids • triglycerides (fats and oils), – http://tinyurl.com/yda73qr • phospholipids (lecithin) • steroids (cholesterol )
  • 16. HDL and LDL cholesterol • http://www.americanheart.org/presenter.jht ml?identifier=180 • LDL = • HDL =
  • 17. Saturated and unsaturated fatty acids. • Naturally occurring fatty acids have a mixture of unsaturated, saturated and polyunsaturated fatty acids. • http://en.wikipedia.org/wiki/Fatty_acid
  • 18. Omega-6 and omega-3 fatty acids • Omega 6 • Omega 3
  • 19. Iodine number • The number of moles of I2 reacting with one mole of fat/oil indicates the number of double bonds present in the fat/oil molecule.
  • 20. Enzyme-catalysed hydrolysis of triglycerides • Ester hydrolysis to carboxylic acid + alcohol
  • 21. Energy content • Fats v Carbohydrates • Carbs – quick rapid absorption • Fats – slow release of energy over time, roughly 2x the amount of energy contained in a carb • http://www.merck.com/mmhe/sec12/ch152/ch1 52b.html
  • 22. Roles of lipids • energy storage • insulation and protection of organs • steroid hormones • structural component of cell membrane • omega-3 poly-unsaturated fatty acids reduce • the risk of heart disease • poly-unsaturated fats may lower levels of LDL cholesterol
  • 23. Negative Effects • increased risk of heart disease from elevated levels of LDL cholesterol and trans fatty acids; • the major source of LDL cholesterol is saturated fats, in particular lauric (C12), myristic (C14) and palmitic (C16) acids • obesity.
  • 24. Micronutrients • Micronutrients are substances required in very small amounts (mg or μg) and that mainly function as a co-factor of enzymes (<0.005% body weight). • Examples include vitamins and trace minerals (Fe, Cu, F, Zn, I, Se, Mn, Mo, Cr, Co and B).
  • 25. Macronutrients • These are chemical substances that are required in relatively large amounts (>0.005% body weight). • Examples include proteins, fats, carbohydrates and minerals (Na, Mg, K, Ca, P, S and Cl).
  • 26. (vitamin A), calciferol (vitamin D) and ascorbic acid (vitamin C). • Structural comparison
  • 27. Deduce whether a vitamin is water- or fat-soluble from its structure. • water-soluble—vitamins B and C • fat-soluble—vitamins A, D, E and K.
  • 28. Homework • Discuss the causes and effects of nutrient deficiencies in different countries and suggest solutions • (word doc)
  • 29. Hormones • Hormones are micchealmessengers. They are crtdeese directly into the blood by endocrine glands. ExampleslucenidADH, aldosterone, estrogen, progesterone and testosterone, insulin, epinephrine (adrenaline) and thyroxine.
  • 30. The structures of cholesterol and the sex hormones
  • 31. The mode of action of oral contraceptives.
  • 32. The use and abuse of steroids.
  • 33. Higher Level • Enzymes • Nucleic Acids • Respiration • In GREAT chemical detail 
  • 34. Enzymes • enzymes are proteins; activity depends on tertiary and quaternary structure; and the specificity of enzyme action.
  • 35. Compare inorganic catalysts and biological catalysts (enzymes).
  • 36. The relationship between substrate concentration and enzyme activity.
  • 37. Vmax and the value of the Michaelis constant (Km) by graphical means
  • 38. Mechanism of Enzyme Action • enzyme substrate complex, active site and induced fit model.
  • 39. Competitive inhibition and non-competitive inhibition • http://en.wikipedia.org/wiki/File:Comp_inhib. svg
  • 40. Enzyme Activity • Effect of :- – Heavy metal ions – Temperature – pH – http://www.elmhurst.edu/~chm/vchembook/573i nhibit.html
  • 41. Nucleic Acids • Nucleic acids are polymers made up of nucleotides. • A nucleotide contains a phosphate group, a pentose sugar and an organic nitrogenous base. • Students should recognize, but do not need to recall, the structures of the five bases: adenine (A), cytosine (C), guanine (G), thymine (T) and uracil (U). • Nucleic acids are joined by covalent bonds between the phosphate of one nucleotide and the sugar of the next, resulting in a backbone with a repeating pattern of sugar–phosphate–sugar–phosphate. Nitrogenous bases are attached to the sugar of the backbone.
  • 42. RNA and DNA • RNA has ribose as its pentose sugar; DNA has deoxyribose. Deoxyribose lacks an oxygen atom on C2. RNA has uracil instead of thymine as its base. • RNA is a single-strand nucleic acid; DNA is a doublestrand nucleic acid.
  • 43. DNA double helix • The structure has two nucleic acid strands that spiral around an axis. • Describe the hydrogen bonding between specific pairs of nucleotide bases
  • 44. The role of DNA • repository of genetic information. • explain its role in protein synthesis………. • DNA is the genetic material that an individual inherits from its parents. It directs mRNA synthesis (transcription) and, through mRNA, directs protein synthesis (translation) using a triplet code.
  • 45. DNA Profiling • Uses in forensic and paternity cases.
  • 46. Respiration • Aerobic and anaerobic respiration  • In aerobic respiration, glucose is converted into pyruvate, which, in the presence of oxygen, changes to carbon dioxide and water. Overall, glucose undergoes oxidation and oxygen undergoes reduction. In anaerobic respiration, pyruvate is converted to lactate in human beings whereas yeast converts pyruvate to ethanol and carbon dioxide. • Redox equations should be used.
  • 47. The role of Cu • Cytochromes • Hemoglobin