ChemAxon is a leader in providing chemical software development platforms for the biotechnology and pharmaceutical industries. By focusing upon active interaction with users and core portability, ChemAxon creates leading edge cross platform solutions to power modern cheminformatics and chemical communication. Our products and services include application programming interfaces (API) and end user applications for structure visualization and management, property prediction, virtual synthesis, screening and drug design.  Maintaining portability among various operating systems (Windows, Mac, Linux, Solaris, …) and relevance for web based integration is of vital importance in our development. Besides the provision of our software, we work with our partners on large-scale projects resulting in custom tailored solutions in the areas of company specific database tools, intranet and front end solutions. In the non-commercial sphere, in addition to providing some functionality free to everyone, we advance the development of cheminformatics through free provision and support for academic teaching and research and for publically available/non commercial websites. Technology used by ChemAxon: Java for system development, HTML/XML and .NET for web intefaces, OLE to enable seamless integration with desktop applications and JDBC for communication with SQL database systems for data storage and handling. Find more on: www.chemaxon.com

1. THE CHEMAXON STORY

2. ChemAxon around the Globe
Presence in: 35 countries
No of clients: more than 300
No of users: over 300 000
Distributors in: Japan, India,
China, Korea, Singapore
Staff: 124

3. PLATFORM TOOLKIT BASED
Our presence in the pharma industry

4. PLATFORM TOOLKIT BASED
Our presence in the pharma industry

5. PLATFORM TOOLKIT BASED
Our presence in the pharma industry

6. Extensive 3rd party integrations for full solutionpartnership
Partner collaborations
Chemical structure display
Chemical indexing & Structure searching
ELN providers
Data visualization
Inventory

7. What’s HOT?
In ChemAxon Portfolio

8. • Bi-directional conversion
• Includes Chinese &
Japanese names
• User customizable
dictionary (ID’s)
• IUPAC, systematic,
common, commercial
names
• CAS name & reg. no.
Naming technology
A reliable chemical name conversion and mining engine
+ 163 names

9. Introduction Document Annotator
Chemistry extraction and highlighting in documents
• Input: HTML, XML, Text or PDF
document
• Output: HTML, with chemical
structures highlighted
• Usage: Java and .NET API for
integration in custom applications
(also used in ChemCurator)

10. ChemLocator
Find chemistry in unstructured data

11. ChemLocator
Ontology search
• Chemically intelligent ontology supported
chemical and free text search.
• Generate compound list from executing SPARQL
query.
Mycophenolic acid
...Which compounds in my document repository have
the same drug indications as fluorometholone, and are
Lipinski compounds?
propylparaben
Eseroline
Condition: paracetamol
SELECT DISTINCT STR(?label) WHERE { {
SELECT ?label
WHERE
{
?query rdfs:label ?queryText .
FILTER
(?queryText="fluorometholone"^^xsd:string).
?query ?refp ?superclass .
FILTER ( ?refp IN ( owl:equivalentClass,
rdfs:subClassOf ) ) .
?subclass rdfs:subClassOf ?superclass .
?subclass rdfs:label ?label.}}
}

12. • Documents and extracted data
side-by-side
• Structure and Markush extraction
• English, Chinese and Japanese
name to structure
• XML, PDF, HTML input
• OSR support
Computer-assisted chemical data extraction
ChemCurator

13. BIOLOGY
Sketching, Storing, Representing, Sharing

14. BioEddie
- Intuitive structure/
sequence editing
- Supports non-
structure components
(e.g. nanoparticles)
- Native HELM, MOL
and sequence I/O
- Multi-level annotations
- Modular JS application
- Easy to integrate

15. Biological entities in ChemAxon‘s platform
Query types:
- Sequence
- Chemistry
- Features
- Annotations
Biomolecule Toolkit
Java API
REST-ful WS
- Standardize
- Deduplicate
- Convert
- Annotate
- Properties
Import

16. THANK YOU!