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Search for cellular
attachment receptors used
by a GII.4 Norovirus Dijon




Gaurav Dutta Dwivedi
Supervisors: Niklas Arnberg and Carin Årdahl
Introduction
Norovirus are a group of viruses that cause non bacterial gastroenteritis in
humans.

The first outbreak of Norovirus infection was reported in Norwalk, Ohio in
1968.

Human Norovirus infection is popularly known as winter vomiting disease.

Norovirus outbreaks frequently occur in community surroundings.

Noroviruses are predominantly infectious and highly stable in the environment
and immunity following infection generally is short-lived.
Symptoms of Norovirus infection




                                                   Nausea and Vomiting
    Dehydration




                                Fever



 Abdominal cramping                                          Diarrhea

Incubation period is 24 to 48 hours, with the symptoms lasting 12 to 60 hours.
Infected hosts can shed virus in stool for up to 2 weeks.
Transmission of Norovirus
Human Noroviruses recognize histo-blood group antigens (HBGAs)
that are expressed on the surface of mucosal epithelial cells.




Noroviruses infect individuals with a functional alpha-1, 2-fucosyltransferase
(FUT2) gene and are designated as secretor-positive and those with defected
FUT2 gene are termed as secretor-negative ,they are resistant to the common
GII.4 strain, however they can still get infected with other Norovirus strains.
Norovirus Classification




The genogroup II, genotype 4 Noroviruses, designated GII.4, are currently
responsible for 70–80% of Norovirus outbreaks worldwide.
Viral Morphology

 Family Caliciviridae.
 Single-stranded, positive-sense RNA genome of
  ~7.7 kb.
 Non-enveloped and icosahedral.
 27-40 nm.
 The viral genome encodes one major structural
  protein of 60 kDa which forms viral capsid.
 Capsid 180 molecules, folds into 90 dimers.
Norovirus genome comprises of three open reading frames (ORFs).

ORF1 encodes the non-structural proteins that are crucial for virus replication, ORF2 and ORF3
encode a major capsid protein VP1 and a minor structural protein VP2, respectively.

VP1 consists of shell domain (S) and the protruding domain (P).

P domain is further divided into two subdomains known as P1 and P2.

Unpublished observations indicate that the presence of specific integrin-binding motifs plays a
role in interactions for binding to integrins and allows virus particles attachment to the host
cells.
Aim
To explore cellular receptors used by the GII.4 Human Norovirus
(NoV) Dijon Virus Like Particles (VLPs) and analyse its binding
characteristics across various integrin expressing cells.
Why we used Norovirus like particles (NoV-LPs) in the
present study ?


The study of NoV has been hampered
by the lack of an efficient cell culture
system, which is still not available for
Human NoV.
Methods
The Dijon NoV-LPs used were produced in Sf9 insect cells.

The VLPs were clarified using ultracentrifugation and sucrose
density gradient methods , finally the purity was confirmed by
using SDS-PAGE and Western blot.

Flow cytometry was used for evaluation of binding characteristics
of NoV-LPs across various integrin expressing cells.
Production of VLPs



Sf9 cell culture
     Incubate at 130 rpm,28 ˚C, 5 days




                                                         Western blot           SDS-PAGE

      Centrifuge at 3000 g,30 min
      Ultracentrifuge supernatant at
      30000 rpm,2hrs,4˚C
                                                                            Loading on gel


                                               Ultracentrifuge at
                                         60%
                                         50%   320000 rpm,4hrs,4˚C.
                                         40%
                                         30%   Collect the fractions
                                         20%                            1   2     3    4      5

                                                                        Collected fractions
                    Sucrose density gradient
Binding Assay



 Cell culture

       Detach cells and Transfer 200 000 cells/well.




                      Incubate with
                      added VLPs
                                            NoV-LPs                     FACS BD LSRII
96 well plate

     Wash 3 X with 100 µl of PFN and centrifuge every time.      Wash 3X with 100 µl of PFN and transfer
     Centrifuge at 1300 rpm,4˚C for 5 mins                       Into FACS tubes and analyse the binding.

                                                                            goat-anti-rabbit Alexa Flour 647

                                                                           rabbit-anti-NoV
                               Wash with PFN buffer and
                               incubate
                               with the antibodies

                                                       Incubate with primary and secondary antibody
     Centrifuge
Results




          Pooled 3-5   Pooled 6-7




SDS-PAGE showing Fractions1-9 of the   SDS-PAGE of cell lysate from the sf9 cell culture
produced VLPs
Protein gel of pooled concentrated GII.4 Dijon (100K, Amicon filter)
Binding characteristics of NoV-LPs to integrin expressing cells




Figure 1                                           Figure 2


Figure 1 and Figure 2 represents the binding percentage of various integrin expressing cells to
NoV-LPs .
Western blot for the produced VLPs




      Figure 3




Detection of produced NoV-LPs. Figure 3 showing the Western blot results of
Dijon NoV-LPs in various concentrations probed with primary antibody
(rabbit-anti-NoV, serum) and secondary antibody (HRP-conjugated-swine-
anti-rabbit).
Conclusion
In conclusion, the production and characterization of GII.4 NoV-LPs
in insect cells was validated in this study.

Western blot detected NoV-LPs using NoVs raised antibodies from
rabbit sera.

This receptor binding study indicates approximately 2-6 times
increased binding of NoV-LPs to various integrin expressing cells
signifying the importance of integrins as candidate receptors for
NoV.
Future directions

 Repetition of binding experiments with more integrin
  expressing cell lines.

 Immortalization and replication studies using human
  cells.

 Blocking studies for analyzing Norovirus binding.
Acknowledgement

 Carin Årdahl thesis supervisor.

 Professor Niklas Arnberg Division
  of Virology, Umeå university.

 Division of Medical Microbiology,
  Department of Clinical and
  Experimental Medicine,
  LiU(Linköping University),
  Linköping, Sweden.
Norovirus

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Norovirus

  • 1.
  • 2. Search for cellular attachment receptors used by a GII.4 Norovirus Dijon Gaurav Dutta Dwivedi Supervisors: Niklas Arnberg and Carin Årdahl
  • 3. Introduction Norovirus are a group of viruses that cause non bacterial gastroenteritis in humans. The first outbreak of Norovirus infection was reported in Norwalk, Ohio in 1968. Human Norovirus infection is popularly known as winter vomiting disease. Norovirus outbreaks frequently occur in community surroundings. Noroviruses are predominantly infectious and highly stable in the environment and immunity following infection generally is short-lived.
  • 4. Symptoms of Norovirus infection Nausea and Vomiting Dehydration Fever Abdominal cramping Diarrhea Incubation period is 24 to 48 hours, with the symptoms lasting 12 to 60 hours. Infected hosts can shed virus in stool for up to 2 weeks.
  • 6. Human Noroviruses recognize histo-blood group antigens (HBGAs) that are expressed on the surface of mucosal epithelial cells. Noroviruses infect individuals with a functional alpha-1, 2-fucosyltransferase (FUT2) gene and are designated as secretor-positive and those with defected FUT2 gene are termed as secretor-negative ,they are resistant to the common GII.4 strain, however they can still get infected with other Norovirus strains.
  • 7. Norovirus Classification The genogroup II, genotype 4 Noroviruses, designated GII.4, are currently responsible for 70–80% of Norovirus outbreaks worldwide.
  • 8. Viral Morphology  Family Caliciviridae.  Single-stranded, positive-sense RNA genome of ~7.7 kb.  Non-enveloped and icosahedral.  27-40 nm.  The viral genome encodes one major structural protein of 60 kDa which forms viral capsid.  Capsid 180 molecules, folds into 90 dimers.
  • 9. Norovirus genome comprises of three open reading frames (ORFs). ORF1 encodes the non-structural proteins that are crucial for virus replication, ORF2 and ORF3 encode a major capsid protein VP1 and a minor structural protein VP2, respectively. VP1 consists of shell domain (S) and the protruding domain (P). P domain is further divided into two subdomains known as P1 and P2. Unpublished observations indicate that the presence of specific integrin-binding motifs plays a role in interactions for binding to integrins and allows virus particles attachment to the host cells.
  • 10. Aim To explore cellular receptors used by the GII.4 Human Norovirus (NoV) Dijon Virus Like Particles (VLPs) and analyse its binding characteristics across various integrin expressing cells.
  • 11. Why we used Norovirus like particles (NoV-LPs) in the present study ? The study of NoV has been hampered by the lack of an efficient cell culture system, which is still not available for Human NoV.
  • 12. Methods The Dijon NoV-LPs used were produced in Sf9 insect cells. The VLPs were clarified using ultracentrifugation and sucrose density gradient methods , finally the purity was confirmed by using SDS-PAGE and Western blot. Flow cytometry was used for evaluation of binding characteristics of NoV-LPs across various integrin expressing cells.
  • 13. Production of VLPs Sf9 cell culture Incubate at 130 rpm,28 ˚C, 5 days Western blot SDS-PAGE Centrifuge at 3000 g,30 min Ultracentrifuge supernatant at 30000 rpm,2hrs,4˚C Loading on gel Ultracentrifuge at 60% 50% 320000 rpm,4hrs,4˚C. 40% 30% Collect the fractions 20% 1 2 3 4 5 Collected fractions Sucrose density gradient
  • 14. Binding Assay Cell culture Detach cells and Transfer 200 000 cells/well. Incubate with added VLPs NoV-LPs FACS BD LSRII 96 well plate Wash 3 X with 100 µl of PFN and centrifuge every time. Wash 3X with 100 µl of PFN and transfer Centrifuge at 1300 rpm,4˚C for 5 mins Into FACS tubes and analyse the binding. goat-anti-rabbit Alexa Flour 647 rabbit-anti-NoV Wash with PFN buffer and incubate with the antibodies Incubate with primary and secondary antibody Centrifuge
  • 15. Results Pooled 3-5 Pooled 6-7 SDS-PAGE showing Fractions1-9 of the SDS-PAGE of cell lysate from the sf9 cell culture produced VLPs
  • 16. Protein gel of pooled concentrated GII.4 Dijon (100K, Amicon filter)
  • 17. Binding characteristics of NoV-LPs to integrin expressing cells Figure 1 Figure 2 Figure 1 and Figure 2 represents the binding percentage of various integrin expressing cells to NoV-LPs .
  • 18. Western blot for the produced VLPs Figure 3 Detection of produced NoV-LPs. Figure 3 showing the Western blot results of Dijon NoV-LPs in various concentrations probed with primary antibody (rabbit-anti-NoV, serum) and secondary antibody (HRP-conjugated-swine- anti-rabbit).
  • 19. Conclusion In conclusion, the production and characterization of GII.4 NoV-LPs in insect cells was validated in this study. Western blot detected NoV-LPs using NoVs raised antibodies from rabbit sera. This receptor binding study indicates approximately 2-6 times increased binding of NoV-LPs to various integrin expressing cells signifying the importance of integrins as candidate receptors for NoV.
  • 20. Future directions  Repetition of binding experiments with more integrin expressing cell lines.  Immortalization and replication studies using human cells.  Blocking studies for analyzing Norovirus binding.
  • 21. Acknowledgement  Carin Årdahl thesis supervisor.  Professor Niklas Arnberg Division of Virology, Umeå university.  Division of Medical Microbiology, Department of Clinical and Experimental Medicine, LiU(Linköping University), Linköping, Sweden.