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The True Data Life Cycle in BOLD

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Consortium for the Barcode of Life (CBOL)
Consortium for the Barcode of Life (CBOL)

An in depth look at the data life cycle and how BOLD can help people interact globally in relation to barcode projects.

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BOLD and the data life cycle Julie K. Stahlhut Biodiversity Institute of Ontario With examples from BOLD 3.0 Beta
Data life cycle: A common model Data Documentation Initiative, 2004 (http://www.ddialliance.org/) Study concept Data collection Data processing Data distribution Data discovery Data analysis Data archiving Repurposing
What does this mean? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Basic life cycle of barcode data
Data generation
Validation ✗ ✗ ✗ Lab technician Campaignmanager You
Upload
Analysis Hypothesis testing Context (Ecology, geography, phylogeny) ?  Identification and comparison = ?
Publication Project Access: Make this project publicly visible x
The true life cycle Validate Re-visit Generate Publish Analyze Upload
Re-visited data Add value Manage projects Plan research
Project manager Taxonomist Graduate student ? ? ?
BOLD tools Taxonomic expertise Barcode data expertise Future expert
1. Adding value to data
Good sequences but no IDs. Sample code Country Identification Identifier Voucher Location 2010-785 Australia Formicidae U. of Adelaide A2011-Q Australia Formicidae U. of Adelaide ZYZ-1450 Australia Camponotus sp. N. Novice U. of Adelaide 2002-18xt Australia Formicidae U. of Adelaide XM20-36 Australia Formicidae U. of Adelaide ANT-480 Australia Formicidae U. of Adelaide
Reference quality barcodes! Sample code Country Identification Identifier Notes 2010-785 Australia Iridomyrmex purpureus A. Phaenogaster 2011-782 Australia Myrmecia rugosa A. Phaenogaster ZYZ-1450 Australia Polyrhachis australis A. Phaenogaster Corrected 20018xt2 Australia Linepithema humile A. Phaenogaster Invasive XM20-36 Australia Strumigenys sp. A. Phaenogaster ANT-480 Australia Rhytidoponera mayri A. Phaenogaster
 
2. Research planning
? ?
Molecular Statistical Ecological
 
BARCODING SPECIES DIVERSITY Tropical vs. temperate rainforest Formicidae vs. Apidae Research Proposal Lorem Ipsum, M.S. Collaborators: C.M. Bees, University of Guelph A. Phaenogaster, University of Adelaide Abstract: Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. BARCODE duis aute irure velit esse dolore eu Introduction: Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat BOLD . Excepteur sint occaecat
3. Project management Lab progress Sequence quality Collection coverage Data updates
Hymenoptera Barcode Group Quarterly Report: C.M. Bees, Manager ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Hymenoptera Bees -> 2100 Wasps -> 2800 Ants -> 1950
Research Project management Education BOLD resources Collaboration
[object Object],[object Object],[object Object],[object Object],[object Object],Generate Validate Upload Analyze Publish Re-visit
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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The True Data Life Cycle in BOLD

  • 1. BOLD and the data life cycle Julie K. Stahlhut Biodiversity Institute of Ontario With examples from BOLD 3.0 Beta
  • 2. Data life cycle: A common model Data Documentation Initiative, 2004 (http://www.ddialliance.org/) Study concept Data collection Data processing Data distribution Data discovery Data analysis Data archiving Repurposing
  • 3.
  • 4. Basic life cycle of barcode data
  • 6. Validation ✗ ✗ ✗ Lab technician Campaignmanager You
  • 8. Analysis Hypothesis testing Context (Ecology, geography, phylogeny) ?  Identification and comparison = ?
  • 9. Publication Project Access: Make this project publicly visible x
  • 10. The true life cycle Validate Re-visit Generate Publish Analyze Upload
  • 11. Re-visited data Add value Manage projects Plan research
  • 12. Project manager Taxonomist Graduate student ? ? ?
  • 13. BOLD tools Taxonomic expertise Barcode data expertise Future expert
  • 14. 1. Adding value to data
  • 15. Good sequences but no IDs. Sample code Country Identification Identifier Voucher Location 2010-785 Australia Formicidae U. of Adelaide A2011-Q Australia Formicidae U. of Adelaide ZYZ-1450 Australia Camponotus sp. N. Novice U. of Adelaide 2002-18xt Australia Formicidae U. of Adelaide XM20-36 Australia Formicidae U. of Adelaide ANT-480 Australia Formicidae U. of Adelaide
  • 16. Reference quality barcodes! Sample code Country Identification Identifier Notes 2010-785 Australia Iridomyrmex purpureus A. Phaenogaster 2011-782 Australia Myrmecia rugosa A. Phaenogaster ZYZ-1450 Australia Polyrhachis australis A. Phaenogaster Corrected 20018xt2 Australia Linepithema humile A. Phaenogaster Invasive XM20-36 Australia Strumigenys sp. A. Phaenogaster ANT-480 Australia Rhytidoponera mayri A. Phaenogaster
  • 17.  
  • 19. ? ?
  • 21.  
  • 22. BARCODING SPECIES DIVERSITY Tropical vs. temperate rainforest Formicidae vs. Apidae Research Proposal Lorem Ipsum, M.S. Collaborators: C.M. Bees, University of Guelph A. Phaenogaster, University of Adelaide Abstract: Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. BARCODE duis aute irure velit esse dolore eu Introduction: Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat BOLD . Excepteur sint occaecat
  • 23. 3. Project management Lab progress Sequence quality Collection coverage Data updates
  • 24.
  • 25. Research Project management Education BOLD resources Collaboration
  • 26.
  • 27.