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The Revelation of
Jean-Claude Bradley
for the Jean-Claude Bradley Memorial Symposium
Cambridge University - Monday July 14, 2014
Why?
Q: Why did you decide to adopt an open approach?
A: In thinking about what has meaning for me as a
scientist, I realized that the work I was doing wasn’t
having the kind of impact that I would like it to have, and
it was not benefitting mankind in the way I would have
hoped. I concluded that this was partly a consequence of
secrecy. However, I couldn’t be open with the project I
was then working on, because I was collaborating with
someone who didn’t feel the same way as me.
My decision to do open science meant cutting ties with
my previous collaborators. Having done that in 2005, I
started the project UsefulChem.
http://www.infotoday.com/it/sep10/Poynder.shtml
Interview With Jean-Claude Bradley
The Impact of Open Notebook Science
by Richard Poynder
Open Source Science
Open Source Science >>
Open Notebook Science
Influenced by: Peter Murray-Rust & Beth Ritter-Guth
http://drexel-coas-elearning.blogspot.com/2006/09/open-notebook-science.html
Open Notebook Science
Jean-Claude Bradley
Dec 11, 2008
NIST
Associate Professor of Chemistry
Drexel University
Open and Closed Science
Traditional
Lab Notebook
(unpublished)
Traditional
Journal
Article
Open Access
Journal Article
Open Notebook
Science (full
transparency)
CLOSED OPEN
Traditional
Paper
Textbook
F2F lectures
Lectures
Notes
public
Assigned
problems
public
Archived
Lectures
Public and
free online
textbooks
RESEARCH
TEACHING
Motivation: Faster Science, Better Science
Where is Science headed?
WE ARE HERE
There are NO FACTS,
only measurements embedded
within assumptions
Open Notebook Science maintains
the integrity of data provenance by
making assumptions explicit
TRUST
PROOF
Open Notebook Science Challenge
Co-conceived with Cameron Neylon
https://www.flickr.com/photos/24801682@N08/2824469941/
http://usefulchem.blogspot.com/2008/09/open-notebook-science-challenge.html
359 ONS Experiments
4,640 CC0 non-aqueous solubilities
28,645 CC0 melting points
http://figshare.com/articles/Jean_Claude_Bradley_Open_Melting_Point_Datset/1031637
Where is Science headed?
WE ARE HERE
There are NO FACTS,
only measurements embedded
within assumptions
Open Notebook Science maintains
the integrity of data provenance by
making assumptions explicit
 First recrystallized in ethyl acetate in 1906.
Straus and Ecker, Ber. 39, 2988 (1906)
 Recrystallized in ethyl acetate in Organic Syntheses
 Recommended recrystallization solvent: ethyl acetate.
(http://classes.kvcc.edu/chm230/mixed%20aldol%20condensation.pdf
(http://www.xula.edu/chemistry/documents/orgleclab/Aldol_notes.pdf)
Enter compound identification and desired parameters
Lists solvents and their predicted recrystallization yield.
Prediction is generated by the temperature dependent
solubility curves.
The Chemical Rediscovery
Survey and the role of
Openness in Chemistry
Jean-Claude Bradley
March 6, 2014
Research Mini-Symposia
Associate Professor of Chemistry
Drexel University
Drexel University Department of Chemistry
The current paradigm of doing and
sharing science in chemistry
1. Design experiments based on
established or potentially new theories.
2. Execute and record experimental
outcomes in private notebooks.
3. When a sufficient narrative emerges
selective experimental data are
combined to publish, with a limited
amount of “supplementary supporting
data”
What kind of (chemical) worldview
has this approach created?
1. Selective bias towards which
experiment are even attempted.
2. Overconfidence in our understanding
since deviant or ambiguous results are
rarely reported.
Filling in the blind spots with the
Chemical Rediscovery Survey
(chemrs.wikispaces.com)
1. Randomize the mixture of chemicals with
certain criteria*
2. Identify “what happens” after convenient*
periods of time.
3. Follow up on unexpected behavior with the
traditional scientific method.
4. Openly share the entire process, including all
raw data and preliminary hypotheses and
discoveries as it happens.
Open Notebook Science >>
Intelligent System Open Notebook Science

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The Revelation of Jean-Claude Bradley

  • 1. The Revelation of Jean-Claude Bradley for the Jean-Claude Bradley Memorial Symposium Cambridge University - Monday July 14, 2014
  • 3. Q: Why did you decide to adopt an open approach? A: In thinking about what has meaning for me as a scientist, I realized that the work I was doing wasn’t having the kind of impact that I would like it to have, and it was not benefitting mankind in the way I would have hoped. I concluded that this was partly a consequence of secrecy. However, I couldn’t be open with the project I was then working on, because I was collaborating with someone who didn’t feel the same way as me. My decision to do open science meant cutting ties with my previous collaborators. Having done that in 2005, I started the project UsefulChem. http://www.infotoday.com/it/sep10/Poynder.shtml Interview With Jean-Claude Bradley The Impact of Open Notebook Science by Richard Poynder
  • 5.
  • 7. Open Notebook Science Influenced by: Peter Murray-Rust & Beth Ritter-Guth http://drexel-coas-elearning.blogspot.com/2006/09/open-notebook-science.html
  • 8. Open Notebook Science Jean-Claude Bradley Dec 11, 2008 NIST Associate Professor of Chemistry Drexel University
  • 9. Open and Closed Science Traditional Lab Notebook (unpublished) Traditional Journal Article Open Access Journal Article Open Notebook Science (full transparency) CLOSED OPEN Traditional Paper Textbook F2F lectures Lectures Notes public Assigned problems public Archived Lectures Public and free online textbooks RESEARCH TEACHING
  • 10. Motivation: Faster Science, Better Science
  • 11. Where is Science headed? WE ARE HERE
  • 12. There are NO FACTS, only measurements embedded within assumptions Open Notebook Science maintains the integrity of data provenance by making assumptions explicit
  • 14. Open Notebook Science Challenge Co-conceived with Cameron Neylon https://www.flickr.com/photos/24801682@N08/2824469941/ http://usefulchem.blogspot.com/2008/09/open-notebook-science-challenge.html
  • 15. 359 ONS Experiments 4,640 CC0 non-aqueous solubilities 28,645 CC0 melting points http://figshare.com/articles/Jean_Claude_Bradley_Open_Melting_Point_Datset/1031637
  • 16. Where is Science headed? WE ARE HERE
  • 17.
  • 18.
  • 19. There are NO FACTS, only measurements embedded within assumptions Open Notebook Science maintains the integrity of data provenance by making assumptions explicit
  • 20.  First recrystallized in ethyl acetate in 1906. Straus and Ecker, Ber. 39, 2988 (1906)  Recrystallized in ethyl acetate in Organic Syntheses
  • 21.  Recommended recrystallization solvent: ethyl acetate. (http://classes.kvcc.edu/chm230/mixed%20aldol%20condensation.pdf (http://www.xula.edu/chemistry/documents/orgleclab/Aldol_notes.pdf)
  • 22. Enter compound identification and desired parameters
  • 23. Lists solvents and their predicted recrystallization yield. Prediction is generated by the temperature dependent solubility curves.
  • 24. The Chemical Rediscovery Survey and the role of Openness in Chemistry Jean-Claude Bradley March 6, 2014 Research Mini-Symposia Associate Professor of Chemistry Drexel University Drexel University Department of Chemistry
  • 25. The current paradigm of doing and sharing science in chemistry 1. Design experiments based on established or potentially new theories. 2. Execute and record experimental outcomes in private notebooks. 3. When a sufficient narrative emerges selective experimental data are combined to publish, with a limited amount of “supplementary supporting data”
  • 26. What kind of (chemical) worldview has this approach created? 1. Selective bias towards which experiment are even attempted. 2. Overconfidence in our understanding since deviant or ambiguous results are rarely reported.
  • 27. Filling in the blind spots with the Chemical Rediscovery Survey (chemrs.wikispaces.com) 1. Randomize the mixture of chemicals with certain criteria* 2. Identify “what happens” after convenient* periods of time. 3. Follow up on unexpected behavior with the traditional scientific method. 4. Openly share the entire process, including all raw data and preliminary hypotheses and discoveries as it happens.
  • 29. Intelligent System Open Notebook Science